Search result

BaseInfo

ncRNA ID	novel_osa_miR1816
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:11560561-11560649 [-]
Reference genome	IRGSP-1.0
Source	SRR1743002;SRR2099568;SRR2099746;SRR2857731;SRR2857735;SRR3123646;SRR3123650;SRR5049792;SRR5351739;SRR1738227;SRR1738228;SRR1738239
Length	24
Mature sequence(if miRNA)	1 - ACUAGGUUGCUAUAUUUUGGGACG - 24
Stem-loop(if miRNA)	--                  A     U         GU U GUA   UCCCAAAAUAUAGCAACC AGUAC AGAUUAGAU  C C   G   |||||||||||||||||| ||||| |||||||||  | |   C   AGGGUUUUAUAUCGUUGG UCAUG UCUAAUCUG  G G   A GC                  A     U         UG U AUC
Stem-loop sequence	UCCCAAAAUAUAGCAACCAAGUACUAGAUUAGAUGUCUCGUAGCACUAGUGGUGUCUAAUCUUGUACUAGGUUGCUAUAUUUUGGGACG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK100614.1	ncRNA:24   GCAGGGUUUUAUAUCGUUGGAUCA   1   =||||=|||||||||||||||||| targets:1564   UGUCCUAAAAUAUAGCAACCUAGU   1587 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023108A15, full insert sequence	NA	coding protein	psRNATarget
XM_015770193.1	ncRNA:24   GCAGGGUUUUAUAUCGUUGGAUCA   1   =|||||||||||||||||=||||| targets:1826   UGUCCCAAAAUAUAGCAAUCUAGU   1849 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329136 (LOC4329136), transcript variant X1, mRNA	uncharacterized LOC4329136(LOC4329136)	coding protein	psRNATarget
AK120297.1	ncRNA:24   GCAGGGUUUUAUAUCGUUGGAUCA   1   |||||||=|||||||||||||||* targets:1006   CGUCCCAGAAUAUAGCAACCUAGC   1029 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013051O08, full insert sequence	NA	coding protein	psRNATarget
JB164358.1	ncRNA:24   GCAGGGUUUUAUAUCGUUGGAUCA   1   |||||=|=|||||||||||||||* targets:21   CGUCCUAGAAUAUAGCAACCUAGG   44 Target Full Sequence	3.0	Sequence 2022 from Patent EP2559767	NA	coding protein	psRNATarget
JB164411.1	ncRNA:24   GCAGGGUUUUAUAUCGUUGGAUCA   1   |||||=|=|||||||||||||||* targets:21   CGUCCUAGAAUAUAGCAACCUAGG   44 Target Full Sequence	3.0	Sequence 2075 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236080.1	ncRNA:24   GCAGGGUUUUAUAUCGUUGGAUCA   1   |||||=|=|||||||||||||||* targets:21   CGUCCUAGAAUAUAGCAACCUAGG   44 Target Full Sequence	3.0	Sequence 2075 from Patent EP2985353	NA	coding protein	psRNATarget
HI403950.1	ncRNA:24   GCAGGGUUUUAUAUCGUUGGAUCA   1   |||||=|=|||||||||||||||* targets:21   CGUCCUAGAAUAUAGCAACCUAGG   44 Target Full Sequence	3.0	Sequence 2075 from Patent EP2074227	NA	coding protein	psRNATarget
HI403897.1	ncRNA:24   GCAGGGUUUUAUAUCGUUGGAUCA   1   |||||=|=|||||||||||||||* targets:21   CGUCCUAGAAUAUAGCAACCUAGG   44 Target Full Sequence	3.0	Sequence 2022 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236027.1	ncRNA:24   GCAGGGUUUUAUAUCGUUGGAUCA   1   |||||=|=|||||||||||||||* targets:21   CGUCCUAGAAUAUAGCAACCUAGG   44 Target Full Sequence	3.0	Sequence 2022 from Patent EP2985353	NA	coding protein	psRNATarget
CT835293.1	ncRNA:24   GCAGGGUUUUAUAUCGUUGGAUCA   1   ||||==|||||||||||||||||* targets:582   CGUCUUAAAAUAUAGCAACCUAGG   605 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA003I19, full insert sequence	NA	coding protein	psRNATarget
XM_015755391.1	ncRNA:24   GCAGGGUUUUAUAUCGUUGGAUCA   1   |||||||||||||||||||||*|* targets:943   CGUCCCAAAAUAUAGCAACCUUGA   966 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4347400 (LOC4347400), mRNA	uncharacterized LOC4347400(LOC4347400)	coding protein	psRNATarget
HI404090.1	ncRNA:24   GCAGGGUUUUAUAUCGUUGGAUCA   1   |||=|||||||||*|||||||||* targets:9   CGUUCCAAAAUAUUGCAACCUAGG   32 Target Full Sequence	2.5	Sequence 2215 from Patent EP2074227	NA	coding protein	psRNATarget
JB164551.1	ncRNA:24   GCAGGGUUUUAUAUCGUUGGAUCA   1   |||=|||||||||*|||||||||* targets:9   CGUUCCAAAAUAUUGCAACCUAGG   32 Target Full Sequence	2.5	Sequence 2215 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236220.1	ncRNA:24   GCAGGGUUUUAUAUCGUUGGAUCA   1   |||=|||||||||*|||||||||* targets:9   CGUUCCAAAAUAUUGCAACCUAGG   32 Target Full Sequence	2.5	Sequence 2215 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015783917.1	ncRNA:24   GCAGGGUUUUAUAUCGUUGGAUCA   1   |*||==|||||||||||||||||* targets:1672   CAUCUUAAAAUAUAGCAACCUAGG   1695 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group 1-aminocyclopropane-1-carboxylate synthase 7-like (LOC107275928), mRNA	1-aminocyclopropane-1-carboxylate synthase 7-like(LOC107275928)	coding protein	psRNATarget
AK099164.1	ncRNA:24   GCAGGGUUUUAUAUCGUUGGAUCA   1   =||*||||||||||||||*||||| targets:1576   UGUACCAAAAUAUAGCAAACUAGU   1599 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023073O03, full insert sequence	NA	coding protein	psRNATarget
AK106090.1	ncRNA:24   GCAGGGUUUUAUAUCGUUGGAUCA   1   =||*||||||||||||||*||||| targets:1573   UGUACCAAAAUAUAGCAAACUAGU   1596 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-207-B07, full insert sequence	NA	coding protein	psRNATarget
AK061448.1	ncRNA:24   GCAGGGUUUUAUAUCGUUGGAUCA   1   =||*||||||||||||||*||||| targets:1574   UGUACCAAAAUAUAGCAAACUAGU   1597 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:006-307-E03, full insert sequence	NA	coding protein	psRNATarget
XM_015762809.1	ncRNA:24   GCAGGGUUUUAUAUCGUUGGAUCA   1   =||*||||||||||||||*||||| targets:1575   UGUACCAAAAUAUAGCAAACUAGU   1598 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group amino acid permease 3 (LOC4351675), mRNA	amino acid permease 3(LOC4351675)	coding protein	psRNATarget