Search result

BaseInfo

ncRNA ID	novel_osa_miR1813
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:18955831-18955997 [+]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR2097779;SRR1555751;SRR2099567;SRR1556014;SRR1556018
Length	24
Mature sequence(if miRNA)	1 - AACUUUUAUUUUGGUCGUUUCUUC - 24
Stem-loop(if miRNA)	--                              CG                         A       U      AUU     C   AACUUUUAUUUUGGUCGUUUCUUCAUCUGA  AAGUGAUAGUAACAUUGUUUACAAA UUUACAU UUUCUC   UGGUU U   ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||| ||||||   ||||| A   UUGAAAAUAAAACCAGUAAAGAAGUAGGCU  UUCACUAUCAUUGUAACAAGUGUUU AAAUGUA AGAGAG   AUCAA U UG                              AU                         C       U      AAU     A
Stem-loop sequence	AACUUUUAUUUUGGUCGUUUCUUCAUCUGACGAAGUGAUAGUAACAUUGUUUACAAAAUUUACAUUUUUCUCAUUUGGUUCUAUAAACUAUAAGAGAGAUAUGUAAACUUUGUGAACAAUGUUACUAUCACUUUAUCGGAUGAAGAAAUGACCAAAAUAAAAGUUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015764209.1	ncRNA:24   CUUCUUUGCUGGUUUUAUUUUCAA   1   |||||||=|||||||||||||||| targets:32   GAAGAAAUGACCAAAAUAAAAGUU   55 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X7, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
XM_015764210.1	ncRNA:24   CUUCUUUGCUGGUUUUAUUUUCAA   1   |||||||=|||||||||||||||| targets:32   GAAGAAAUGACCAAAAUAAAAGUU   55 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X12, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
XM_015764208.1	ncRNA:24   CUUCUUUGCUGGUUUUAUUUUCAA   1   |||||||=|||||||||||||||| targets:32   GAAGAAAUGACCAAAAUAAAAGUU   55 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X2, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
XM_015764207.1	ncRNA:24   CUUCUUUGCUGGUUUUAUUUUCAA   1   |||||||=|||||||||||||||| targets:32   GAAGAAAUGACCAAAAUAAAAGUU   55 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X1, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
AK107543.1	ncRNA:24   CUUCUUUGCUGGUUUUAUUUUCAA   1   |||-|||=|||||||||||||||| targets:1308   GAA-AAAUGACCAAAAUAAAAGUU   1330 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-129-H11, full insert sequence	NA	coding protein	psRNATarget
AK107543.1	ncRNA:24   CUUCUUUGCUGGUUUUAUUUUCAA   1   *|**=*|=|||||||||||||||| targets:1153   UAUUGUAUGACCAAAAUAAAAGUU   1176 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-129-H11, full insert sequence	NA	coding protein	psRNATarget
CT831299.1	ncRNA:24   CUUCUUUGCUGGUUUUAUUUUCAA   1   |=|||||=|||||||||||||*|| targets:1073   GGAGAAAUGACCAAAAUAAAAAUU   1096 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA205E03, full insert sequence	NA	coding protein	psRNATarget
CT831299.1	ncRNA:24   CUUCUUUGCUGGUUUUAUUUUCAA   1   *||||||**||||||||||||||| targets:919   AAAGAAAAAACCAAAAUAAAAGUU   942 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA205E03, full insert sequence	NA	coding protein	psRNATarget
AK068923.1	ncRNA:24   CUUCUUUGCUGGUUUUAUUUUCAA   1   |=|||||=|||||||||||||*|| targets:1613   GGAGAAAUGACCAAAAUAAAAAUU   1636 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013170A09, full insert sequence	NA	coding protein	psRNATarget
AK068923.1	ncRNA:24   CUUCUUUGCUGGUUUUAUUUUCAA   1   |||-|||=**|||||||||||||| targets:1460   GAA-AAAUACCCAAAAUAAAAGUU   1482 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013170A09, full insert sequence	NA	coding protein	psRNATarget