| ncRNA ID | novel_osa_miR1812 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr4:5621975-5622194 [+] |
| Reference genome | IRGSP-1.0 |
| Source | SRR1298758;SRR2097779;SRR2098822;SRR2099428;SRR2099436;SRR1300837 |
| Length | 21 |
| Mature sequence(if miRNA) | 1 - AAAUUACUUGUCGUUCUAGCU - 21 |
| Stem-loop(if miRNA) |
-AAAU GUC ---- A A CU A CAUC UUUUUU GAUUCACUGA UACUU GUUCUAGCUUUGUCCU UAA CAUGUAUAUCUUUGACCAUCAAUUUUUA AAA C UAUGGUUUAA AUAUGA UUUA C ||||| |||||||||||||||| ||| |||||||||||||||||||||||||||| ||| | |||||||||| |||||| |||| AUGAA CAAGAUCGAAACAGGA GUU GUACAUAUAGAAACUGGUAGUUAAAAAU UUU G AUAUCAAGUU UAUACU AAAU A AGUUU AAA UUCA C C AG C ---U CAACAU AAUUUCAUAA |
| Stem-loop sequence | AAAUUACUUGUCGUUCUAGCUUUGUCCUUAAACAUGUAUAUCUUUGACCAUCAAUUUUUAAAAACUCAUAUGGUUUAACAUCAUAUGAUUUUUUUUUAGAUUCACUGACAAAUACUUUAAUAAAUACAACUCAUAUUUUGAACUAUACGGAUUUCUAAAAAUUGAUGGUCAAAGAUAUACAUGCUUGACUUAGGACAAAGCUAGAACAAAAAGUAUUUGA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_015777668.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group nephrocystin-3 (LOC4331630), transcript variant X8, mRNA | nephrocystin-3(LOC4331630) | coding protein | psRNATarget | |||||||||
| AK121051.1 |
|
2.5 | Oryza sativa Japonica Group cDNA clone:J023055G22, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| AK065527.1 |
|
1.0 | Oryza sativa Japonica Group cDNA clone:J013032P14, full insert sequence | NA | coding protein | psRNATarget |