| ncRNA ID | novel_osa_miR1796 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr7:25367077-25367271 [-] |
| Reference genome | IRGSP-1.0 |
| Source | SRR1743002;SRR1849769;SRR2040380;SRR2040402;SRR2040403;SRR2040407;SRR2040408;SRR2040411;SRR3123648;SRR1738235 |
| Length | 24 |
| Mature sequence(if miRNA) | 172 - ACGGAACUACAGAUUUAAUGCACC - 195 |
| Stem-loop(if miRNA) |
-- U CACC G U GAAG A U U C - G -C C ACGGAACUACAGAUUUAA G AUAUCACAAAACUACA AUUUAG GAU UUAUCA AAA CUACA AUU UA GA UUUAGAU GUAG A |||||||||||||||||| | |||||||||||||||| |||||| ||| |||||| ||| ||||| ||| || || ||||||| |||| C UGCCUUGAUGUCUAAAUU C UAUAGUGUUUUGGUGU UAAAUU UUG AAUAGU UUU GAUGU UAA AU UU AAAUUUA UAUU U AG C AUAA G U AUAA G U C A A G UU A |
| Stem-loop sequence | ACGGAACUACAGAUUUAAUGCACCAUAUCACAAAACUACAGAUUUAGUGAUGAAGUUAUCAAAAAUCUACAUAUUCUAGAGUUUAGAUCGUAGCACUAUUAUUUAUUUAAAGUUAUAAAAUCUGUAGUUUUGUGAUAAAAUAGUUUUUAAAUGUGUGGUUUUGUGAUAUAAUACCUUAAAUCUGUAGUUCCGUGA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_015792093.1 |
|
1.0 | PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g13040, mitochondrial (LOC4344353), transcript variant X1, mRNA | pentatricopeptide repeat-containing protein At1g13040, mitochondrial(LOC4344353) | coding protein | psRNATarget | |||||||||
| AK101635.1 |
|
1.0 | Oryza sativa Japonica Group cDNA clone:J033055B02, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| AK288881.1 |
|
2.5 | Oryza sativa Japonica Group cDNA, clone: J090079G03, full insert sequence | NA | coding protein | psRNATarget |