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BaseInfo

ncRNA ID	novel_osa_miR1795
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:3230418-3230466 [+]
Reference genome	IRGSP-1.0
Source	SRR1743002
Length	20
Mature sequence(if miRNA)	30 - UUCAGAUUCGUAGUAUUAGA - 49
Stem-loop(if miRNA)	--C        A     AG   UG    AGUGUUGC AAUCU  AUA  C    |||||||| |||||  |||  U    UUAUGAUG UUAGA  UGU  A AGA        C     CU   UU
Stem-loop sequence	CAGUGUUGCAAAUCUAGAUAUGCUAUUUGUUCAGAUUCGUAGUAUUAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015790044.1	ncRNA:20   AGAUUAUGAUGCUUAGACUU   1   ||||||||||=||||||||| targets:742   UCUAAUACUAUGAAUCUGAA   761 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278089 (LOC107278089), mRNA	uncharacterized LOC107278089(LOC107278089)	coding protein	psRNATarget
CT829763.1	ncRNA:20   AGAUUAUGAUGCUUAGACUU   1   ||||||||||||||||||=| targets:976   UCUAAUACUACGAAUCUGGA   995 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105M10, full insert sequence	NA	coding protein	psRNATarget
AK066512.1	ncRNA:20   AGAUUAUGAUGCUUAGACUU   1   ||||||||||||||||||=| targets:979   UCUAAUACUACGAAUCUGGA   998 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013068C19, full insert sequence	NA	coding protein	psRNATarget
AK288631.1	ncRNA:20   AGAUUAUGAUGCUUAGACUU   1   ||||=|||||||||||||=| targets:4126   UCUAGUACUACGAAUCUGGA   4145 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090055C12, full insert sequence	NA	coding protein	psRNATarget
JB164009.1	ncRNA:20   AGAUUAUGAUGCUUAGACUU   1   *|||||||||||||||||=| targets:154   CCUAAUACUACGAAUCUGGA   173 Target Full Sequence	1.5	Sequence 1673 from Patent EP2559767	NA	coding protein	psRNATarget
HI403548.1	ncRNA:20   AGAUUAUGAUGCUUAGACUU   1   *|||||||||||||||||=| targets:154   CCUAAUACUACGAAUCUGGA   173 Target Full Sequence	1.5	Sequence 1673 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235678.1	ncRNA:20   AGAUUAUGAUGCUUAGACUU   1   *|||||||||||||||||=| targets:154   CCUAAUACUACGAAUCUGGA   173 Target Full Sequence	1.5	Sequence 1673 from Patent EP2985353	NA	coding protein	psRNATarget
AK288418.1	ncRNA:20   AGAUUAUGAUGCUUAGACUU   1   *|||||||||||||||||=| targets:889   CCUAAUACUACGAAUCUGGA   908 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090031L18, full insert sequence	NA	coding protein	psRNATarget
XM_015778756.1	ncRNA:20   AGAUUAUGAUGCUUAGACUU   1   ||||*||||||||||||||| targets:1364   UCUACUACUACGAAUCUGAA   1383 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group RING-H2 finger protein ATL72 (LOC4335822), transcript variant X1, mRNA	RING-H2 finger protein ATL72(LOC4335822)	coding protein	psRNATarget
HI404529.1	ncRNA:20   AGAUUAUGAUGCUUAGACUU   1   *|||=|||||=||||||||| targets:22   CCUAGUACUAUGAAUCUGAA   41 Target Full Sequence	2.5	Sequence 2654 from Patent EP2074227	NA	coding protein	psRNATarget
JB164990.1	ncRNA:20   AGAUUAUGAUGCUUAGACUU   1   *|||=|||||=||||||||| targets:22   CCUAGUACUAUGAAUCUGAA   41 Target Full Sequence	2.5	Sequence 2654 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236659.1	ncRNA:20   AGAUUAUGAUGCUUAGACUU   1   *|||=|||||=||||||||| targets:22   CCUAGUACUAUGAAUCUGAA   41 Target Full Sequence	2.5	Sequence 2654 from Patent EP2985353	NA	coding protein	psRNATarget
AK107672.1	ncRNA:20   AGAUUAUGAUGCUUAGACUU   1   *|||=|||||||||||||=| targets:880   CCUAGUACUACGAAUCUGGA   899 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-131-H10, full insert sequence	NA	coding protein	psRNATarget
XM_015775668.1	ncRNA:20   AGAUUAUGAUGCUUAGACUU   1   *|||=|||||||||||||=| targets:1588   CCUAGUACUACGAAUCUGGA   1607 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group RNA pseudouridine synthase 5 (LOC4332490), mRNA	RNA pseudouridine synthase 5(LOC4332490)	coding protein	psRNATarget
XM_015759388.1	ncRNA:20   AGAUUAUGAUGCUUAGACUU   1   *||==||||||||||||||| targets:420   CCUGGUACUACGAAUCUGAA   439 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group ent-cassadiene C2-hydroxylase-like (LOC4348721), transcript variant X2, mRNA	ent-cassadiene C2-hydroxylase-like(LOC4348721)	coding protein	psRNATarget
AK288145.1	ncRNA:20   AGAUUAUGAUGCUUAGACUU   1   *|||=|||*||||||||||| targets:186   ACUAGUACAACGAAUCUGAA   205 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J080314I04, full insert sequence	NA	coding protein	psRNATarget
JB164896.1	ncRNA:20   AGAUUAUGAUGCUUAGACUU   1   |*||||||*||||||||||| targets:18   UAUAAUACAACGAAUCUGAA   37 Target Full Sequence	2.5	Sequence 2560 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236565.1	ncRNA:20   AGAUUAUGAUGCUUAGACUU   1   |*||||||*||||||||||| targets:18   UAUAAUACAACGAAUCUGAA   37 Target Full Sequence	2.5	Sequence 2560 from Patent EP2985353	NA	coding protein	psRNATarget
HI404435.1	ncRNA:20   AGAUUAUGAUGCUUAGACUU   1   |*||||||*||||||||||| targets:18   UAUAAUACAACGAAUCUGAA   37 Target Full Sequence	2.5	Sequence 2560 from Patent EP2074227	NA	coding protein	psRNATarget