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BaseInfo

ncRNA ID	novel_osa_miR1791
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:13645576-13645715 [-]
Reference genome	IRGSP-1.0
Source	SRR1743002
Length	24
Mature sequence(if miRNA)	117 - AGUUGGUGCACGUCACAGAUGAUG - 140
Stem-loop(if miRNA)	--     GU  A             G                        G                UGG   AGUUG  GC CGUCACAGAUGAU GUCAUCUGUGACGGGCCACAACUU AGGCCCGUUUGAGAUA   A   |||||  || ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||   UCAAC  CG GCAGUGUCUACUG UAGUAGACACUGCCCGGUGUUGAA UCCGGGCAAACUCUAU   A UU     AC  G             G                        A                UGU
Stem-loop sequence	AGUUGGUGCACGUCACAGAUGAUGGUCAUCUGUGACGGGCCACAACUUGAGGCCCGUUUGAGAUAUGGAAUGUUAUCUCAAACGGGCCUAAAGUUGUGGCCCGUCACAGAUGAUGGUCAUCUGUGACGGGCCACAACUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK068923.1	ncRNA:24   GUAGUAGACACUGCACGUGGUUGA   1   |||||||*||||||||||||||=| targets:1172   CAUCAUCCGUGACGUGCACCAAUU   1195 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013170A09, full insert sequence	NA	coding protein	psRNATarget
CT832323.1	ncRNA:24   GUAGUAGACACUGCACGUGGUUGA   1   **|||*|||*|||||||||||||* targets:569   GUUCAACUGGGACGUGCACCAACG   592 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA048K12, full insert sequence	NA	coding protein	psRNATarget
AK059971.1	ncRNA:24   GUAGUAGACACUGCACGUGGUUGA   1   **|||*|||*|||||||||||||* targets:600   GUUCAACUGGGACGUGCACCAACG   623 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:006-211-H01, full insert sequence	NA	coding protein	psRNATarget
AK071387.1	ncRNA:24   GUAGUAGACACUGCACGUGGUUGA   1   **|||*|||*|||||||||||||* targets:601   GUUCAACUGGGACGUGCACCAACG   624 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023091J19, full insert sequence	NA	coding protein	psRNATarget
XM_015765225.1	ncRNA:24   GUAGUAGACACUGCACGUGGUUGA   1   **|||*|||*|||||||||||||* targets:659   GUUCAACUGGGACGUGCACCAACG   682 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group probable prefoldin subunit 3 (LOC4352529), mRNA	probable prefoldin subunit 3(LOC4352529)	coding protein	psRNATarget