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BaseInfo

ncRNA ID	novel_osa_miR1789
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:16271270-16271342 [-]
Reference genome	IRGSP-1.0
Source	SRR1743002;SRR5049780
Length	23
Mature sequence(if miRNA)	51 - AUGUAUAGAUCUAAUGUUGUAGU - 73
Stem-loop(if miRNA)	--A        UC       G   UG  --C     C    UGUAUAGA  UAAUGUU UAG  AA   UGAAA A    ||||||||  ||||||| |||  ||   ||||| U    AUAUAUUU  GUUACAA GUC  UU   GCUUU U GGA        UC       A   GU  AUC     A
Stem-loop sequence	AUGUAUAGAUCUAAUGUUGUAGUGAACUGAAACAUUAUUUCGCUAUUUGCUGAAACAUUGCUUUUAUAUAAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK289141.1	ncRNA:23   UGAUGUUGUAAUCUAGAUAUGUA   1   |||||||||||||||=||||||| targets:3138   ACUACAACAUUAGAUUUAUACAU   3160 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090099F05, full insert sequence	NA	coding protein	psRNATarget
AK289141.1	ncRNA:23   UGAUGUUGUAAUCUAGAUAUGUA   1   |||=||||||||*|||||||||| targets:2987   ACUGCAACAUUAAAUCUAUACAU   3009 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090099F05, full insert sequence	NA	coding protein	psRNATarget
AK107514.1	ncRNA:23   UGAUGUUGUAAUCUAGAUAUGUA   1   |||=||||||||||||||||=|| targets:1467   ACUGCAACAUUAGAUCUAUAUAU   1489 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-129-F02, full insert sequence	NA	coding protein	psRNATarget
AK288248.1	ncRNA:23   UGAUGUUGUAAUCUAGAUAUGUA   1   |||=|||||||||=||||||||| targets:2183   ACUGCAACAUUAGGUCUAUACAU   2205 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090014I17, full insert sequence	NA	coding protein	psRNATarget
AK120827.1	ncRNA:23   UGAUGUUGUAAUCUAGAUAUGUA   1   |||||||||||||||||=||||* targets:3215   ACUACAACAUUAGAUCUGUACAC   3237 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023019E13, full insert sequence	NA	coding protein	psRNATarget
AK121287.1	ncRNA:23   UGAUGUUGUAAUCUAGAUAUGUA   1   |||||||||||||||||=||||* targets:3653   ACUACAACAUUAGAUCUGUACAC   3675 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023108P15, full insert sequence	NA	coding protein	psRNATarget
XM_015777657.1	ncRNA:23   UGAUGUUGUAAUCUAGAUAUGUA   1   *||*|=|=*|||||||||||||| targets:2553   UCUUCGAUUUUAGAUCUAUACAU   2575 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group zinc finger A20 and AN1 domain-containing stress-associated protein 7 (LOC4334394), transcript variant X3, mRNA	zinc finger A20 and AN1 domain-containing stress-associated protein 7(LOC4334394)	coding protein	psRNATarget