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BaseInfo

ncRNA ID	novel_osa_miR1785
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:24238400-24238488 [+]
Reference genome	IRGSP-1.0
Source	SRR1743002;SRR5351742
Length	24
Mature sequence(if miRNA)	66 - UUAACCGGGACUAAAAAUGAUCUU - 89
Stem-loop(if miRNA)	--C   G                  ---U  U   -AA  -  GAAU    GUC AUUUUUAGUCCCGGUUGG    GU UCC   CC AG    A    ||| ||||||||||||||||||    || |||   || ||    A    UAG UAAAAAUCAGGGCCAAUU    CA AGG   GG UC    A UUC   -                  UUUU  C   CGG  A  AGAA
Stem-loop sequence	CGUCGAUUUUUAGUCCCGGUUGGUGUUUCCAACCAGGAAUAAAAAGACUAGGGGCGGACACUUUUUUAACCGGGACUAAAAAUGAUCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288405.1	ncRNA:24   UUCUAGUAAAAAUCAGGGCCAAUU   1   |||||=|||||||||||||||||| targets:2344   AAGAUUAUUUUUAGUCCCGGUUAA   2367 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090030E11, full insert sequence	NA	coding protein	psRNATarget
AK288438.1	ncRNA:24   UUCUAGUAAAAAUCAGGGCCAAUU   1   |||||=|||||||||||=|||||| targets:1278   AAGAUUAUUUUUAGUCCUGGUUAA   1301 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
AK288438.1	ncRNA:24   UUCUAGUAAAAAUCAGGGCCAA-UU   1   ||||||||||||||||||||||-|| targets:1348   AAGAUCAUUUUUAGUCCCGGUUCAA   1372 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
XM_015755884.1	ncRNA:24   UUCUAGUAAAAAUCAGGGCCAA-UU   1   ||||||||||||||||||||||-|| targets:1319   AAGAUCAUUUUUAGUCCCGGUUCAA   1343 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group S-norcoclaurine synthase 1 (LOC4346830), mRNA	S-norcoclaurine synthase 1(LOC4346830)	coding protein	psRNATarget
XM_015755884.1	ncRNA:24   UUCUAGUAAAAAUCAGGGCCAAUU   1   |||||||||||||||*|||||||| targets:1274   AAGAUCAUUUUUAGUGCCGGUUAA   1297 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group S-norcoclaurine synthase 1 (LOC4346830), mRNA	S-norcoclaurine synthase 1(LOC4346830)	coding protein	psRNATarget
XM_015779829.1	ncRNA:24   UUCUAGUAAAAAUCAGGGCCAAUU   1   |||||*||||||||||||||||=| targets:1586   AAGAUGAUUUUUAGUCCCGGUUGA   1609 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
XM_015779829.1	ncRNA:24   UUCUAGUAAAAAUCAGGGCCAAUU   1   ||*|||||*|||||||||||||*| targets:1644   AAAAUCAUCUUUAGUCCCGGUUCA   1667 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
AK288424.1	ncRNA:24   UUCUAGUAAAAAUCAGGGCCAAUU   1   ||*||*||*||||||||||||||= targets:2376   AAAAUGAUCUUUAGUCCCGGUUAG   2399 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
AK288463.1	ncRNA:24   UUCUAGUAAAAAUCAGGGCCAAUU   1   ||||||||||*|||||||||||*| targets:499   AAGAUCAUUUGUAGUCCCGGUUCA   522 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
XM_015759969.1	ncRNA:24   UUCUAGUAAAAAUCAGGGCCAAUU   1   |=||||||*|||||||||||||*| targets:1866   AGGAUCAUCUUUAGUCCCGGUUCA   1889 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group F-box/LRR-repeat protein At3g58930 (LOC9269963), transcript variant X3, mRNA	F-box/LRR-repeat protein At3g58930(LOC9269963)	coding protein	psRNATarget
XM_015759968.1	ncRNA:24   UUCUAGUAAAAAUCAGGGCCAAUU   1   |=||||||*|||||||||||||*| targets:3364   AGGAUCAUCUUUAGUCCCGGUUCA   3387 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group F-box/LRR-repeat protein At3g58930 (LOC9269963), transcript variant X1, mRNA	F-box/LRR-repeat protein At3g58930(LOC9269963)	coding protein	psRNATarget
AK061057.1	ncRNA:24   UUCUAGUAAAAAUCAGGGCCAAUU   1   ||*||*||*||||||||||||||| targets:243   AAAAUGAUCUUUAGUCCCGGUUAA   266 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:006-205-H07, full insert sequence	NA	coding protein	psRNATarget