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BaseInfo

ncRNA ID	novel_osa_miR1782
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:20226373-20226592 [+]
Reference genome	IRGSP-1.0
Source	SRR1743002;SRR2040395
Length	21
Mature sequence(if miRNA)	200 - AAACGGCUUAUAAUAUGAAAC - 220
Stem-loop(if miRNA)	--                   C  C C              --GCUAUC         A       -  U      CUAC   A     U   ---UU    UG    UAAUA   UUUAUAUUAUAAGUCGUUU GA U UUUUUUCUAGUCAG        AAGUUUAUA AAAAAGU UA UAACAU    AAC CCAAA UAG     UUAU  AAAU     U   ||||||||||||||||||| || | ||||||||||||||        ||||||||| ||||||| || ||||||    ||| ||||| |||     ||||  ||||     U   AAGUAUAAUAUUCGGCAAA CU A AAAAAGGAUUAGUU        UUCAAAUAU UUUUUUA AU GUUGUA    UUG GGUUU AUU     AAUA  UUUA     U CA                   A  A A              AUUAAAAA         C       U  C      AAAA   -     U   UGUAU    GU    UAUAA
Stem-loop sequence	UUUAUAUUAUAAGUCGUUUCGACUCUUUUUUCUAGUCAGGCUAUCAAGUUUAUAAAAAAAGUUAUUAACAUCUACAACACCAAAUUAGUUUUAUUGAAAUUAAUAUUUAAUAUAUUUUGAUAAUAUGUUUAUUUUGGGUUAAAAAUGUUGCUAUAUUUUUUCUAUAAACUUAAAAAUUAUUGAUUAGGAAAAAAAAUCAAAACGGCUUAUAAUAUGAAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015756146.1	ncRNA:21   CAAAGUAUAAUAUUCGGCAAA   1   |||||||||||||||=||||| targets:3518   GUUUCAUAUUAUAAGUCGUUU   3538 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group type I inositol polyphosphate 5-phosphatase 2 (LOC4347930), transcript variant X4, mRNA	type I inositol polyphosphate 5-phosphatase 2(LOC4347930)	coding protein	psRNATarget
AK064238.1	ncRNA:21   CAAAGUAUAAUAUUCGGCAAA   1   |||||||||||||||=||||| targets:1114   GUUUCAUAUUAUAAGUCGUUU   1134 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-105-A09, full insert sequence	NA	coding protein	psRNATarget
AK110785.1	ncRNA:21   CAAAGUAUAAUAUUCGGCAAA   1   ||||=||||||||=||||||| targets:1073   GUUUUAUAUUAUAGGCCGUUU   1093 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-171-C06, full insert sequence	NA	coding protein	psRNATarget
XM_015789811.1	ncRNA:21   CAAAGUAUAAUAUUCGGCAAA   1   ||||=||||||||||=||||| targets:763   GUUUUAUAUUAUAAGUCGUUU   783 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4343998 (LOC4343998), transcript variant X1, mRNA	uncharacterized LOC4343998(LOC4343998)	coding protein	psRNATarget
XM_015767715.1	ncRNA:21   CAAAGUAUAAUAUUCGGCAAA   1   *||||||||||||||=||||| targets:2675   AUUUCAUAUUAUAAGUCGUUU   2695 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group chaperone protein ClpB1-like (LOC107276891), mRNA	chaperone protein ClpB1-like(LOC107276891)	coding protein	psRNATarget
AK288895.1	ncRNA:21   CAAAGUAUAAUAUUCGGCAAA   1   *||||||||||||||=||||| targets:3181   AUUUCAUAUUAUAAGUCGUUU   3201 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090080F08, full insert sequence	NA	coding protein	psRNATarget
AK288707.1	ncRNA:21   CAAAGUAUAAUAUUCGGCAAA   1   |||||||||||||*||||||| targets:857   GUUUCAUAUUAUAUGCCGUUU   877 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090061M09, full insert sequence	NA	coding protein	psRNATarget
AK240728.1	ncRNA:21   CAAAGUAUAAUAUUCGGCAAA   1   *|||=||||||||||=||||| targets:1054   AUUUUAUAUUAUAAGUCGUUU   1074 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J043029C11, full insert sequence	NA	coding protein	psRNATarget
AK288575.1	ncRNA:21   CAAAGUAUAAUAUUCGGCAAA   1   ||*||||||||||||=||||| targets:2619   GUCUCAUAUUAUAAGUCGUUU   2639 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090049A09, full insert sequence	NA	coding protein	psRNATarget
XM_015795843.1	ncRNA:21   CAAAGUAUAAUAUUCGGCAAA   1   ||*||||||||||||=||||| targets:2634   GUCUCAUAUUAUAAGUCGUUU   2654 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At5g56310 (LOC4347034), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At5g56310(LOC4347034)	coding protein	psRNATarget
AK288412.1	ncRNA:21   CAAAGUAUAAUAUUCGGCAAA   1   *|||*|||||||||||||||| targets:2311   AUUUAAUAUUAUAAGCCGUUU   2331 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090030N09, full insert sequence	NA	coding protein	psRNATarget
XM_015766509.1	ncRNA:21   CAAAGUAUAAUAUUCGGCAAA   1   ||||||||||*|||||||||* targets:1415   GUUUCAUAUUUUAAGCCGUUA   1435 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pectin acetylesterase 5 (LOC4324923), transcript variant X2, mRNA	pectin acetylesterase 5(LOC4324923)	coding protein	psRNATarget
AK111574.1	ncRNA:21   CAAAGUAUAAUAUUCGGCAAA   1   ||||||*||||||||*||||| targets:2015   GUUUCACAUUAUAAGACGUUU   2035 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013074D22, full insert sequence	NA	coding protein	psRNATarget