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BaseInfo

ncRNA ID	novel_osa_miR1775
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:23612281-23612449 [-]
Reference genome	IRGSP-1.0
Source	SRR1743002
Length	24
Mature sequence(if miRNA)	146 - UUUUCUUGCACUGUUUGACCACUC - 169
Stem-loop(if miRNA)	-    -                            C    CAU    AAAUUAUUAUUUAUUUUUUUC  GACUUACUUUAUUAUCCAAAAUACUU  UUUU CUUGCACUGUUUGACCACUCGUCUUAUU AAAA   UUUG                     GU                          U  |||| |||||||||||||||||||||||||||| ||||   ||||                     ||  AAAA GAACGUGACAAACUGGUGAGCAGAAUAA UUUU   AAAC                     CG                          A A    C                            A    -UU    --------------------A  UUUAUAUUUUUUGCUUUUCAACACGA
Stem-loop sequence	UUUUCUUGCACUGUUUGACCACUCGUCUUAUUCAAAACAUUUUGAAAUUAUUAUUUAUUUUUUUCGUGACUUACUUUAUUAUCCAAAAUACUUUAAGCACAACUUUUCGUUUUUUAUAUUUGCACAAAUUUUUUAAAUAAGACGAGUGGUCAAACAGUGCAAGCAAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT837708.1	ncRNA:24   CUCACCAGUUUGUCACGUUC-UUUU   1   ||||||||||||||||||||-|||| targets:670   GAGUGGUCAAACAGUGCAAGCAAAA   694 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA220M04, full insert sequence	NA	coding protein	psRNATarget
AK068624.1	ncRNA:24   CUCACCAGUUUGUCACGUUC-UUUU   1   ||||||||||||||||||||-|||| targets:187   GAGUGGUCAAACAGUGCAAGCAAAA   211 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013153F11, full insert sequence	NA	coding protein	psRNATarget
AK111668.1	ncRNA:24   CUCACCAGUUUGUCACGUUCUUUU   1   |||||||||||||||*|||||||| targets:4394   GAGUGGUCAAACAGUACAAGAAAA   4417 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013153P21, full insert sequence	NA	coding protein	psRNATarget
HI404089.1	ncRNA:24   CUCACCAGUUUGUCACGUUCUUUU   1   ||*|||||||||||||=||||||| targets:154   GAAUGGUCAAACAGUGUAAGAAAA   177 Target Full Sequence	1.5	Sequence 2214 from Patent EP2074227	NA	coding protein	psRNATarget
JB164550.1	ncRNA:24   CUCACCAGUUUGUCACGUUCUUUU   1   ||*|||||||||||||=||||||| targets:154   GAAUGGUCAAACAGUGUAAGAAAA   177 Target Full Sequence	1.5	Sequence 2214 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236219.1	ncRNA:24   CUCACCAGUUUGUCACGUUCUUUU   1   ||*|||||||||||||=||||||| targets:154   GAAUGGUCAAACAGUGUAAGAAAA   177 Target Full Sequence	1.5	Sequence 2214 from Patent EP2985353	NA	coding protein	psRNATarget
CT837645.1	ncRNA:24   CUCACCAGUUUGUCACGUUC-UUUU   1   ||*|||||||||||||||||-|||| targets:607   GAAUGGUCAAACAGUGCAAGUAAAA   631 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN063B15, full insert sequence	NA	coding protein	psRNATarget
AK288203.1	ncRNA:24   CUCACCAGUUUGUCACGUUC-UUUU   1   ||*|||||||||||||||||-|||| targets:1705   GAAUGGUCAAACAGUGCAAGCAAAA   1729 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090008K12, full insert sequence	NA	coding protein	psRNATarget
AK066510.1	ncRNA:24   CUCACCAGUUUGUCACGUUC-UUUU   1   *|*|||||||||||||||||-|||| targets:1426   AAAUGGUCAAACAGUGCAAGCAAAA   1450 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013068L16, full insert sequence	NA	coding protein	psRNATarget