Search result

BaseInfo

ncRNA ID	novel_osa_miR1770
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:22369505-22369661 [+]
Reference genome	IRGSP-1.0
Source	SRR1743002
Length	22
Mature sequence(if miRNA)	1 - UUACAACGUUUGACCACUCAUC - 22
Stem-loop(if miRNA)	--UUA   CG           ----AUC       AUUUUUUUUAAAUAUUAAAAAAUGAAAAGUUAUGUUUAAAGUACU      CAA  UUUGACCACUC       UUAUUUA                                             G      |||  |||||||||||       |||||||                                             U      GUU  AAACUGGUGAG       AUUAAAA                                             A CGAAC   AU           CAAAAUA       AAAAAUUUUAAUAAUAAAUAAAAUAAACACUAAAUGAAAUAAUAA
Stem-loop sequence	UUACAACGUUUGACCACUCAUCUUAUUUAAUUUUUUUUAAAUAUUAAAAAAUGAAAAGUUAUGUUUAAAGUACUGUAAAUAAUAAAGUAAAUCACAAAUAAAAUAAAUAAUAAUUUUAAAAAAAAAUUAAUAAAACGAGUGGUCAAAUAUUGCAAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015767968.1	ncRNA:22   CUACUCACCAGUUUGCAACAUU   1   |||||||*|||||||||||||| targets:1579   GAUGAGUAGUCAAACGUUGUAA   1600 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group altered inheritance rate of mitochondria protein 25 (LOC4328840), mRNA	altered inheritance rate of mitochondria protein 25(LOC4328840)	coding protein	psRNATarget
XM_015767620.1	ncRNA:22   CUACUCACCAGUUUGCAACAUU   1   ||*||||||||||||||||||| targets:1970   GACGAGUGGUCAAACGUUGUAA   1991 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4324862 (LOC4324862), mRNA	uncharacterized LOC4324862(LOC4324862)	coding protein	psRNATarget
AK289081.1	ncRNA:22   CUACUCACCAGUUUGCAACAUU   1   ||*||||||||||||||||||| targets:2984   GACGAGUGGUCAAACGUUGUAA   3005 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090095E02, full insert sequence	NA	coding protein	psRNATarget
AK100009.1	ncRNA:22   CUACUCACCAGUUUGCAACAUU   1   ||*||||||||||||||||*|| targets:1033   GACGAGUGGUCAAACGUUGCAA   1054 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013138B09, full insert sequence	NA	coding protein	psRNATarget
AK064773.1	ncRNA:22   CUACUCACCAGUUUGCAACAUU   1   ||*||||||||||||||||*|| targets:3053   GACGAGUGGUCAAACGUUGCAA   3074 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013000A22, full insert sequence	NA	coding protein	psRNATarget
AK288319.1	ncRNA:22   CUACUCACCAGUUUGCAACAUU   1   ||*||||||||||||||||*|| targets:1847   GACGAGUGGUCAAACGUUGCAA   1868 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090021O08, full insert sequence	NA	coding protein	psRNATarget
AK288382.1	ncRNA:22   CUACUCACCAGUUUGCAACAUU   1   |||||*|||||||||||||*|| targets:1538   GAUGAAUGGUCAAACGUUGAAA   1559 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090026M23, full insert sequence	NA	coding protein	psRNATarget
AK064477.1	ncRNA:22   CUACUCACCAGUUUGCAACAUU   1   ||*||*|||||||||||||||* targets:76   GACGAAUGGUCAAACGUUGUAC   97 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-111-A02, full insert sequence	NA	coding protein	psRNATarget
AK072517.1	ncRNA:22   CUACUCACCAGUUUGCAACAUU   1   ||*||*|||||||||||||||* targets:1805   GACGAAUGGUCAAACGUUGUAC   1826 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023133J02, full insert sequence	NA	coding protein	psRNATarget
AK102017.1	ncRNA:22   CUACUCACCAGUUUGCAACAUU   1   ||*||*|||||||||||||*|| targets:1052   GACGAAUGGUCAAACGUUGCAA   1073 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033080F19, full insert sequence	NA	coding protein	psRNATarget
XM_015773783.1	ncRNA:22   CUACUCACCAGUUUGCAACAUU   1   ||*|||||*||||||||||*|| targets:1973   GACGAGUGAUCAAACGUUGCAA   1994 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group alanine aminotransferase 2 (LOC9266500), transcript variant X1, mRNA	alanine aminotransferase 2(LOC9266500)	coding protein	psRNATarget
XM_015773784.1	ncRNA:22   CUACUCACCAGUUUGCAACAUU   1   ||*|||||*||||||||||*|| targets:2067   GACGAGUGAUCAAACGUUGCAA   2088 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group alanine aminotransferase 2 (LOC9266500), transcript variant X2, mRNA	alanine aminotransferase 2(LOC9266500)	coding protein	psRNATarget
AK288920.1	ncRNA:22   CUACUCACCAGUUUGCAACAUU   1   ||**|||||||||||||||*|| targets:4049   GACAAGUGGUCAAACGUUGCAA   4070 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090081L22, full insert sequence	NA	coding protein	psRNATarget
AK288846.1	ncRNA:22   CUACUCACCAGUUUGCAACAUU   1   |=*||||*|||||||*|||||| targets:1374   GGCGAGUAGUCAAACAUUGUAA   1395 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090075E22, full insert sequence	NA	coding protein	psRNATarget