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BaseInfo

ncRNA ID	novel_osa_miR1769
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:4833650-4833725 [+]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR1556014;SRR4407779;SRR4407953;SRR4407956;SRR4407958;SRR4407959
Length	24
Mature sequence(if miRNA)	53 - CUAGGUUUGUUUAUUUUGGGACGG - 76
Stem-loop(if miRNA)	--                 G           AUGU  C   GUCCCAAAAUAAACAAA CUAGUACGGGG    GG A   ||||||||||||||||| |||||||||||    || C   CAGGGUUUUAUUUGUUU GAUCAUGUCCU    CC U GG                 G           -GAU  U
Stem-loop sequence	GUCCCAAAAUAAACAAAGCUAGUACGGGGAUGUGGCACUUCCUAGUCCUGUACUAGGUUUGUUUAUUUUGGGACGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK063393.1	ncRNA:24   GGCAGGGUUUUAUUUGUUUGGAUC   1   ||||||||||||||||||||*||* targets:1129   CCGUCCCAAAAUAAACAAACAUAU   1152 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-114-H05, full insert sequence	NA	coding protein	psRNATarget
HI403736.1	ncRNA:24   GGCAGGGUUUUAUUUGUUUGGAUC   1   |=||=|||||||||||||||*||| targets:9   CUGUUCCAAAAUAAACAAACGUAG   32 Target Full Sequence	1.5	Sequence 1861 from Patent EP2074227	NA	coding protein	psRNATarget
JB164197.1	ncRNA:24   GGCAGGGUUUUAUUUGUUUGGAUC   1   |=||=|||||||||||||||*||| targets:9   CUGUUCCAAAAUAAACAAACGUAG   32 Target Full Sequence	1.5	Sequence 1861 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235866.1	ncRNA:24   GGCAGGGUUUUAUUUGUUUGGAUC   1   |=||=|||||||||||||||*||| targets:9   CUGUUCCAAAAUAAACAAACGUAG   32 Target Full Sequence	1.5	Sequence 1861 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015784597.1	ncRNA:24   GGCAGGGUUUUAUUUGUUUGGAUC   1   |=*|||=|||||||||*||||||| targets:2350   CUAUCCUAAAAUAAACCAACCUAG   2373 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g62470, mitochondrial (LOC4338514), transcript variant X4, mRNA	pentatricopeptide repeat-containing protein At3g62470, mitochondrial(LOC4338514)	coding protein	psRNATarget
XM_015784596.1	ncRNA:24   GGCAGGGUUUUAUUUGUUUGGAUC   1   |=*|||=|||||||||*||||||| targets:2350   CUAUCCUAAAAUAAACCAACCUAG   2373 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g62470, mitochondrial (LOC4338514), transcript variant X3, mRNA	pentatricopeptide repeat-containing protein At3g62470, mitochondrial(LOC4338514)	coding protein	psRNATarget
XM_015784593.1	ncRNA:24   GGCAGGGUUUUAUUUGUUUGGAUC   1   |=*|||=|||||||||*||||||| targets:2350   CUAUCCUAAAAUAAACCAACCUAG   2373 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g62470, mitochondrial (LOC4338514), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At3g62470, mitochondrial(LOC4338514)	coding protein	psRNATarget
XM_015784595.1	ncRNA:24   GGCAGGGUUUUAUUUGUUUGGAUC   1   |=*|||=|||||||||*||||||| targets:2350   CUAUCCUAAAAUAAACCAACCUAG   2373 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g62470, mitochondrial (LOC4338514), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At3g62470, mitochondrial(LOC4338514)	coding protein	psRNATarget