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BaseInfo

ncRNA ID	novel_osa_miR1752
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:16793311-16793415 [+]
Reference genome	IRGSP-1.0
Source	SRR1743002
Length	23
Mature sequence(if miRNA)	83 - UUGAAGGGAACUAAACACAGCCU - 105
Stem-loop(if miRNA)	--A     CAA             UC ---AU    -AG    C   A       C    CUGUG   UUGGUUUUUUUCA  C     AUUU   UGUU CAU CAUGUGU U    |||||   |||||||||||||  |     ||||   |||| ||| |||||||    GACAC   AAUCAAGGGAAGU  G     UGAA   GCAA GUA GUAUACA A UCC     --A             UU AAGAU    AAA    U   -       A
Stem-loop sequence	ACUGUGCAAUUGGUUUUUUUCAUCCAUAUUUAGUGUUCCAUACAUGUGUCUAAACAUAUGAUGUAACGAAAAAGUUAGAAGUUUGAAGGGAACUAAACACAGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK109823.1	ncRNA:23   UCCGACACAAAUCAAGGGAAGUU   1   ||||||||||||||||||||||| targets:1633   AGGCUGUGUUUAGUUCCCUUCAA   1655 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:002-148-A11, full insert sequence	NA	coding protein	psRNATarget
AK288343.1	ncRNA:23   UCCGACACAAAUCAAGGGAAGUU   1   ||||*|||||||||||||||||| targets:165   AGGCAGUGUUUAGUUCCCUUCAA   187 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090023K08, full insert sequence	NA	coding protein	psRNATarget
XM_015774666.1	ncRNA:23   UCCGACACAAAUCAAGGGAAGUU   1   |||||||||||||||||||*||| targets:1642   AGGCUGUGUUUAGUUCCCUCCAA   1664 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase 73C5 (LOC4332879), mRNA	UDP-glycosyltransferase 73C5(LOC4332879)	coding protein	psRNATarget
XM_015794745.1	ncRNA:23   UCCGACACAAAUCAAGGGAAGUU   1   =|||*|||||||||||||||||| targets:4419   GGGCAGUGUUUAGUUCCCUUCAA   4441 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group DNA polymerase I B, mitochondrial (LOC4344791), transcript variant X4, mRNA	DNA polymerase I B, mitochondrial(LOC4344791)	coding protein	psRNATarget
XM_015794743.1	ncRNA:23   UCCGACACAAAUCAAGGGAAGUU   1   =|||*|||||||||||||||||| targets:4196   GGGCAGUGUUUAGUUCCCUUCAA   4218 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group DNA polymerase I B, mitochondrial (LOC4344791), transcript variant X1, mRNA	DNA polymerase I B, mitochondrial(LOC4344791)	coding protein	psRNATarget
XM_015794744.1	ncRNA:23   UCCGACACAAAUCAAGGGAAGUU   1   =|||*|||||||||||||||||| targets:3612   GGGCAGUGUUUAGUUCCCUUCAA   3634 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group DNA polymerase I B, mitochondrial (LOC4344791), transcript variant X2, mRNA	DNA polymerase I B, mitochondrial(LOC4344791)	coding protein	psRNATarget
AK108128.1	ncRNA:23   UC---CGACACAAAUCAAGGGAAGUU   1   ||---|=|||||||||||||=||||| targets:752   AGUGUGUUGUGUUUAGUUCCUUUCAA   777 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-139-D07, full insert sequence	NA	coding protein	psRNATarget
XM_015794866.1	ncRNA:23   UC---CGACACAAAUCAAGGGAAGUU   1   ||---|=|||||||||||||=||||| targets:752   AGUGUGUUGUGUUUAGUUCCUUUCAA   777 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group non-classical arabinogalactan protein 30 (LOC4324728), mRNA	non-classical arabinogalactan protein 30(LOC4324728)	coding protein	psRNATarget
AK241401.1	ncRNA:23   UCCGACACAAAUCAAGGGAAGUU   1   *|||||||*||||||||||||=| targets:1238   UGGCUGUGAUUAGUUCCCUUCGA   1260 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065158N07, full insert sequence	NA	coding protein	psRNATarget
XM_015782486.1	ncRNA:23   UCCGACACAAAUCAAGGGAAGUU   1   *|||||||*||||||||||||=| targets:1237   UGGCUGUGAUUAGUUCCCUUCGA   1259 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group GDSL esterase/lipase At5g45910 (LOC9269310), mRNA	GDSL esterase/lipase At5g45910(LOC9269310)	coding protein	psRNATarget
XM_015762359.1	ncRNA:23   UCCGACACAAAUCAAGGGAAGUU   1   **||||||||||*|||||||||| targets:2270   UAGCUGUGUUUAUUUCCCUUCAA   2292 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107275719 (LOC107275719), mRNA	uncharacterized LOC107275719(LOC107275719)	coding protein	psRNATarget