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BaseInfo

ncRNA ID novel_osa_miR1747
Species Oryza sativa
Class miRNA
Genome position Chr1:28838116-28838220 [-]
Reference genome IRGSP-1.0
Source SRR1555746;SRR2097778;SRR2097779;SRR2098823;SRR2099567;SRR2099745;SRR2099746;SRR1556014
Length 21
Mature sequence(if miRNA) 1 - UACAACUUAUAGAAGUCGAAU - 21
Stem-loop(if miRNA) --          C    C      A                 G   AUAU  G
  UCGACUUCUA AAGU GUAACA AAAUAACAAAUUGGACU UGA    GU U
  |||||||||| |||| |||||| ||||||||||||||||| |||    ||
  AGCUGAAGAU UUCA CAUUGU UUUAUUGUUUAAUUUGA AUU    CA A
UA          A    A      C                 G   -GAU  U
Stem-loop sequence UCGACUUCUACAAGUCGUAACAAAAAUAACAAAUUGGACUGUGAAUAUGUGUAUACUAGUUAGAGUUUAAUUUGUUAUUUCUGUUACAACUUAUAGAAGUCGAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015788270.1
ncRNA:21   UAAGCUGAAGAUAUUCAACAU   1
  ||||*||||=|||||||||||
targets:222   AUUCAACUUUUAUAAGUUGUA   242

2.5 PREDICTED: Oryza sativa Japonica Group ABC transporter G family member 28 (LOC4342153), transcript variant X1, mRNA ABC transporter G family member 28(LOC4342153) coding protein psRNATarget
XM_015788271.1
ncRNA:21   UAAGCUGAAGAUAUUCAACAU   1
  ||||*||||=|||||||||||
targets:222   AUUCAACUUUUAUAAGUUGUA   242

2.5 PREDICTED: Oryza sativa Japonica Group ABC transporter G family member 28 (LOC4342153), transcript variant X2, mRNA ABC transporter G family member 28(LOC4342153) coding protein psRNATarget