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BaseInfo

ncRNA ID	novel_osa_miR1741
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:13041523-13041729 [-]
Reference genome	IRGSP-1.0
Source	SRR1743002;SRR1849770;SRR2857732;SRR3123630;SRR3123645;SRR1612403;SRR1738225;SRR1738226
Length	24
Mature sequence(if miRNA)	184 - AAUAACUCAUCAAGAUCUAGAACU - 207
Stem-loop(if miRNA)	--                C               U             C       A  U   C      A        U  U      -AUG    AUA   U   AAUAACUCAUCAAGAU UAGAACUUUUAUUUU GUUAUUUCUUCAU CGAUAAA UG UAG AAUAUU UUCACAAA UU ACAUAU    UGUU   GUU A   |||||||||||||||| ||||||||||||||| ||||||||||||| ||||||| || ||| |||||| |||||||| || ||||||    ||||   ||| U   UUAUUGAGUAGUUCUA AUUUUGAAAAUAAAA CAGUAAAGAAGUA GCUGUUU AC GUC UUGUAA AAGUGUUU AA UGUAUA    ACAG   CAA A AC                A               C             U       C  U   A      C        U  U      GAGA    -AC   A
Stem-loop sequence	AAUAACUCAUCAAGAUCUAGAACUUUUAUUUUUGUUAUUUCUUCAUCCGAUAAAAUGUUAGCAAUAUUAUUCACAAAUUUUACAUAUAUGUGUUAUAGUUUAUAAAACCAGACAAGAGAUAUGUUAAUUUUGUGAACAAUGUUACUGUCACUUUGUCGUAUGAAGAAAUGACCAAAAUAAAAGUUUUAAAUCUUGAUGAGUUAUUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK107543.1	ncRNA:24   UCAAGAUCUAGAACUACUCAAUAA   1   ||||=||||||||||||||||||| targets:1173   AGUUUUAGAUCUUGAUGAGUUAUU   1196 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:002-129-H11, full insert sequence	NA	coding protein	psRNATarget
AK107543.1	ncRNA:24   UCAAGAUCUAGAACUACUCAAUAA   1   ||||*|||||*||||||||||||* targets:1327   AGUUAUAGAUGUUGAUGAGUUAUA   1350 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-129-H11, full insert sequence	NA	coding protein	psRNATarget
XM_015764209.1	ncRNA:24   UCAAGAUCUAGAACUACUCAAUAA   1   ||||*||||||||||||||||||* targets:52   AGUUAUAGAUCUUGAUGAGUUAUA   75 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X7, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
XM_015764210.1	ncRNA:24   UCAAGAUCUAGAACUACUCAAUAA   1   ||||*||||||||||||||||||* targets:52   AGUUAUAGAUCUUGAUGAGUUAUA   75 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X12, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
XM_015764208.1	ncRNA:24   UCAAGAUCUAGAACUACUCAAUAA   1   ||||*||||||||||||||||||* targets:52   AGUUAUAGAUCUUGAUGAGUUAUA   75 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X2, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
XM_015764207.1	ncRNA:24   UCAAGAUCUAGAACUACUCAAUAA   1   ||||*||||||||||||||||||* targets:52   AGUUAUAGAUCUUGAUGAGUUAUA   75 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X1, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
AK068923.1	ncRNA:24   UCAAGAUCUAGAACUACUCAAUAA   1   ||||*||||||||||||||||||* targets:1479   AGUUAUAGAUCUUGAUGAGUUAUA   1502 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013170A09, full insert sequence	NA	coding protein	psRNATarget
AK121156.1	ncRNA:24   UCAAGAUCUAGAACUACUCAAUAA   1   ||||*||*|||||||||||||||* targets:122   AGUUAUAAAUCUUGAUGAGUUAUA   145 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023079A20, full insert sequence	NA	coding protein	psRNATarget