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BaseInfo

ncRNA ID ath-miR8179
Species Arabidopsis thaliana
Class miRNA
Genome position chr4:7161853-7161963 [-]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 78 - UGACUGCAUUAACUUGAUCGU - 98
Stem-loop(if miRNA)     ---------GA    U    A                              UG A
CACC           AUCA AUUG CUGCAUUAACUUGAUCGUUGGUUGUUAAGA  G U
||||           |||| |||| ||||||||||||||||||||||||||||||  |
GUGG           UAGU UAAC GACGUAAUUGAACUAGCAACCAACAAUUCU  U A
    AAUUAUUCUUC    C    C                              GU U
Stem-loop sequence CACCGAAUCAUAUUGACUGCAUUAACUUGAUCGUUGGUUGUUAAGAUGGAUAUUUGUCUUAACAACCAACGAUCAAGUUAAUGCAGCCAAUCUGAUCUUCUUAUUAAGGUG

Reference

1 PMID:24119003
"Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots";
Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutierrez RA;
BMC Genomics. 14:701(2013).