ncRNA ID | ath-miR8179 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr4:7161853-7161963 [-] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 78 - UGACUGCAUUAACUUGAUCGU - 98 |
Stem-loop(if miRNA) |
    ---------GA    U    A                              UG A CACC           AUCA AUUG CUGCAUUAACUUGAUCGUUGGUUGUUAAGA  G U ||||           |||| |||| ||||||||||||||||||||||||||||||  | GUGG           UAGU UAAC GACGUAAUUGAACUAGCAACCAACAAUUCU  U A     AAUUAUUCUUC    C    C                              GU U |
Stem-loop sequence | CACCGAAUCAUAUUGACUGCAUUAACUUGAUCGUUGGUUGUUAAGAUGGAUAUUUGUCUUAACAACCAACGAUCAAGUUAAUGCAGCCAAUCUGAUCUUCUUAUUAAGGUG |
1 | PMID:24119003
"Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots"; Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutierrez RA; BMC Genomics. 14:701(2013). |