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BaseInfo

ncRNA ID	novel_osa_miR1727
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:14305580-14305669 [+]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR1556014
Length	24
Mature sequence(if miRNA)	1 - AUAAGGGAUUUUAGACGGAUGGGA - 24
Stem-loop(if miRNA)	--            A              -A   UU    AACGAA   AUAAGGGAUUUU GACGGAUGGGACAC  UUC  GUAC      U   |||||||||||| ||||||||||||||  |||  ||||   UGUUUCCUAAAA CUGUCUGUCCUGUG  AAG  CAUG      C UA            C              AG   -U    ACAGAU
Stem-loop sequence	AUAAGGGAUUUUAGACGGAUGGGACACAUUCUUGUACAACGAAUCUAGACAGUACUGAAGAGUGUCCUGUCUGUCCAAAAUCCUUUGUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288305.1	ncRNA:24   AGGGUAGGCAGAUUUUAGGGAAUA   1   ||=|||||||||||||||=||||| targets:1050   UCUCAUCCGUCUAAAAUCUCUUAU   1073 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090020F20, full insert sequence	NA	coding protein	psRNATarget
AK288305.1	ncRNA:24   AGGGUAGGCAGAUUUUAGGGAAUA   1   ||=|||||||||||||||=||||| targets:1381   UCUCAUCCGUCUAAAAUCUCUUAU   1404 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090020F20, full insert sequence	NA	coding protein	psRNATarget
XM_015792363.1	ncRNA:24   AGGGUAGGCAGAUUUUAGGGAAUA   1   ||*|||||*||||||||||||||| targets:2089   UCACAUCCCUCUAAAAUCCCUUAU   2112 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group protein RFT1 homolog (LOC4343254), transcript variant X2, mRNA	protein RFT1 homolog(LOC4343254)	coding protein	psRNATarget
XM_015792362.1	ncRNA:24   AGGGUAGGCAGAUUUUAGGGAAUA   1   ||*|||||*||||||||||||||| targets:2206   UCACAUCCCUCUAAAAUCCCUUAU   2229 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group protein RFT1 homolog (LOC4343254), transcript variant X1, mRNA	protein RFT1 homolog(LOC4343254)	coding protein	psRNATarget
AK288180.1	ncRNA:24   AGGGUAGGCAGAUUUUAGGGAAUA   1   ||*|||||*||||||||||||||| targets:1340   UCACAUCCCUCUAAAAUCCCUUAU   1363 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090005C24, full insert sequence	NA	coding protein	psRNATarget
JB164206.1	ncRNA:24   AGGGUAGGCAGAUUUUAGGGAAUA   1   ||=|||||*||*|||||||||||| targets:75   UCUCAUCCCUCCAAAAUCCCUUAU   98 Target Full Sequence	2.5	Sequence 1870 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235875.1	ncRNA:24   AGGGUAGGCAGAUUUUAGGGAAUA   1   ||=|||||*||*|||||||||||| targets:75   UCUCAUCCCUCCAAAAUCCCUUAU   98 Target Full Sequence	2.5	Sequence 1870 from Patent EP2985353	NA	coding protein	psRNATarget
HI403745.1	ncRNA:24   AGGGUAGGCAGAUUUUAGGGAAUA   1   ||=|||||*||*|||||||||||| targets:75   UCUCAUCCCUCCAAAAUCCCUUAU   98 Target Full Sequence	2.5	Sequence 1870 from Patent EP2074227	NA	coding protein	psRNATarget
AK106725.1	ncRNA:24   AGGGUAGGCAGAUUUUAGGGAAUA   1   ||*|=|||*||||=|||||||||| targets:1830   UCGCGUCCCUCUAGAAUCCCUUAU   1853 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-114-H01, full insert sequence	NA	coding protein	psRNATarget
XM_015765116.1	ncRNA:24   AGGGUAGGCAGAUUUUAGGGAAUA   1   ||*|=|||*||||=|||||||||| targets:3309   UCGCGUCCCUCUAGAAUCCCUUAU   3332 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group armadillo repeat-containing kinesin-like protein 3 (LOC4352796), mRNA	armadillo repeat-containing kinesin-like protein 3(LOC4352796)	coding protein	psRNATarget
XM_015778756.1	ncRNA:24   AGGGUAGGCAGAUUUUAGGGAAUA   1   ||*=||||*||*|||||||||||| targets:1393   UCAUAUCCUUCCAAAAUCCCUUAU   1416 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group RING-H2 finger protein ATL72 (LOC4335822), transcript variant X1, mRNA	RING-H2 finger protein ATL72(LOC4335822)	coding protein	psRNATarget
XM_015770193.1	ncRNA:24   AGGGUAGGCAGAUUUUAGGGAAUA   1   ||*=||||*||*|||||||||||| targets:1137   UCAUAUCCCUCCAAAAUCCCUUAU   1160 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329136 (LOC4329136), transcript variant X1, mRNA	uncharacterized LOC4329136(LOC4329136)	coding protein	psRNATarget