Search result

BaseInfo

ncRNA ID	novel_osa_miR1701
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:1058197-1058285 [-]
Reference genome	IRGSP-1.0
Source	SRR1743002
Length	24
Mature sequence(if miRNA)	66 - AUCGGUGACGGGCUUUAAUUAAUG - 89
Stem-loop(if miRNA)	--              U  -      G   ----    GA      G   AUCGGUGACGGGCU UA AUUAAU CCC    GAUA  GAUUAA U   |||||||||||||| || |||||| |||    ||||  ||||||   UAGUCACUGCCCGA AU UGAUUA GGG    CUGU  UUAAUU G AG              U  A      G   CCAA    AC      A
Stem-loop sequence	AUCGGUGACGGGCUUUAAUUAAUGCCCGAUAGAGAUUAAGUGAUUAAUUCAUGUCAACCGGGGAUUAGUAUAUAGCCCGUCACUGAUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK119390.1	ncRNA:24   GUAAUUAAUUUCGGGCAGUGGCUA   1   ||||||*||||||||||||||||| targets:3119   CAUUAACUAAAGCCCGUCACCGAU   3142 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:001-132-C09, full insert sequence	NA	coding protein	psRNATarget
AK068923.1	ncRNA:24   GUAAUUAAUUUCGGGCAGUGGCUA   1   ||||||*||||||||||||||||| targets:1275   CAUUAACUAAAGCCCGUCACCGAU   1298 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013170A09, full insert sequence	NA	coding protein	psRNATarget
LQ235906.1	ncRNA:24   GUAAUUAAUUUCGGGCAGUGGCUA   1   |=|*||*|||=||||||||||||* targets:141   CGUAAACUAAGGCCCGUCACCGAC   164 Target Full Sequence	3.0	Sequence 1901 from Patent EP2985353	NA	coding protein	psRNATarget
JB164237.1	ncRNA:24   GUAAUUAAUUUCGGGCAGUGGCUA   1   |=|*||*|||=||||||||||||* targets:141   CGUAAACUAAGGCCCGUCACCGAC   164 Target Full Sequence	3.0	Sequence 1901 from Patent EP2559767	NA	coding protein	psRNATarget
HI403776.1	ncRNA:24   GUAAUUAAUUUCGGGCAGUGGCUA   1   |=|*||*|||=||||||||||||* targets:141   CGUAAACUAAGGCCCGUCACCGAC   164 Target Full Sequence	3.0	Sequence 1901 from Patent EP2074227	NA	coding protein	psRNATarget
AK288447.1	ncRNA:24   GUAAUUAAUUUCGGGCAGUGGCUA   1   |*||**||==|||||||||||||| targets:463   CCUUCUUUGGAGCCCGUCACCGAU   486 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090034N03, full insert sequence	NA	coding protein	psRNATarget