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BaseInfo

ncRNA ID	novel_osa_miR1696
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:5079764-5079925 [+]
Reference genome	IRGSP-1.0
Source	SRR1743002;SRR1743006;SRR3123648;SRR5351737;SRR1738235
Length	24
Mature sequence(if miRNA)	139 - GUCCAUUUUUCGAUCCAACGGUAG - 162
Stem-loop(if miRNA)	--AA                A                   C       C           --    UCGUAAGUUUACUUAU     CGUUGGAUCGAAAAAU GACGUCUAAGAUUUGUCCA GUCAUCA GAGUAAAAAUU  UUAC                G     |||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||  ||||     GCAACCUAGCUUUUUA CUGCAGAUUCUAAGCAGGU CAGUGGU CUCAUUUUUAA  CGAG                A GAUG                C                   A       A           AA    GUUCAUUUGAAAAAUG
Stem-loop sequence	AACGUUGGAUCGAAAAAUAGACGUCUAAGAUUUGUCCACGUCAUCACGAGUAAAAAUUUUACUCGUAAGUUUACUUAUGAGUAAAAAGUUUACUUGGAGCAAAAUUUUUACUCAUGGUGACAUGGACGAAUCUUAGACGUCCAUUUUUCGAUCCAACGGUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015763997.1	ncRNA:24   GAUGGCAACCUAGCUUUUUACCUG   1   |||||||||||||||=|||||||| targets:816   CUACCGUUGGAUCGAGAAAUGGAC   839 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group chitinase-like protein 2 (LOC107279727), mRNA	chitinase-like protein 2(LOC107279727)	coding protein	psRNATarget
XM_015789578.1	ncRNA:24   GAUGGCAACCUAGCUUUUUACCUG   1   |||*=||||||||||||||||||| targets:1788   CUAAUGUUGGAUCGAAAAAUGGAC   1811 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group protein SRC2 (LOC9270916), mRNA	protein SRC2(LOC9270916)	coding protein	psRNATarget
AK070426.1	ncRNA:24   GAUGGCAACCUAGCUUUUUACCUG   1   =||=**||||||*||||||||||| targets:1235   UUAUAUUUGGAUGGAAAAAUGGAC   1258 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023050K06, full insert sequence	NA	coding protein	psRNATarget
AK069418.1	ncRNA:24   GAUGGCAACCUAGCUUUUUACCUG   1   =||=**||||||*||||||||||| targets:1333   UUAUAUUUGGAUGGAAAAAUGGAC   1356 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023020C19, full insert sequence	NA	coding protein	psRNATarget
XM_015791956.1	ncRNA:24   GAUGGCAACCUAGCUUUUUACCUG   1   =||=**||||||*||||||||||| targets:1462   UUAUAUUUGGAUGGAAAAAUGGAC   1485 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable protein phosphatase 2C 64 (LOC4343629), mRNA	probable protein phosphatase 2C 64(LOC4343629)	coding protein	psRNATarget
AK110619.1	ncRNA:24   GAUG-GCAACCUAGCUUUUUACCUG   1   *||=-||**|||||||||||||||= targets:954   AUAUACGGCGGAUCGAAAAAUGGAU   978 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-168-H12, full insert sequence	NA	coding protein	psRNATarget
XM_015782893.1	ncRNA:24   GAUG-GCAACCUAGCUUUUUACCUG   1   *||=-||**|||||||||||||||= targets:1022   AUAUACGGCGGAUCGAAAAAUGGAU   1046 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group putative transcription factor bHLH107 (LOC4337905), transcript variant X3, mRNA	putative transcription factor bHLH107(LOC4337905)	coding protein	psRNATarget
XM_015782891.1	ncRNA:24   GAUG-GCAACCUAGCUUUUUACCUG   1   *||=-||**|||||||||||||||= targets:1162   AUAUACGGCGGAUCGAAAAAUGGAU   1186 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group putative transcription factor bHLH107 (LOC4337905), transcript variant X1, mRNA	putative transcription factor bHLH107(LOC4337905)	coding protein	psRNATarget