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BaseInfo

ncRNA ID	novel_osa_miR1690
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:4439372-4439435 [-]
Reference genome	IRGSP-1.0
Source	SRR1743002
Length	24
Mature sequence(if miRNA)	1 - UACAAUGAAUCUGGACAUGCUCAU - 24
Stem-loop(if miRNA)	--       C   A          CU   UAA   GAGCAUG CCA AUUUAUUGUA  AUG   U   ||||||| ||| ||||||||||  |||   CUCGUAC GGU UAAGUAACAU  UAC   G UA       A   C          UC   CUU
Stem-loop sequence	GAGCAUGCCCAAAUUUAUUGUACUAUGUAAUGUUCCAUCUUACAAUGAAUCUGGACAUGCUCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ236287.1	ncRNA:24   UA-CUCGUACAGGUCUAAGUAACAU   1   ||-|||=|||||||||||||||||| targets:44   AUAGAGUAUGUCCAGAUUCAUUGUA   68 Target Full Sequence	1.0	Sequence 2282 from Patent EP2985353	NA	coding protein	psRNATarget
JB164618.1	ncRNA:24   UA-CUCGUACAGGUCUAAGUAACAU   1   ||-|||=|||||||||||||||||| targets:44   AUAGAGUAUGUCCAGAUUCAUUGUA   68 Target Full Sequence	1.0	Sequence 2282 from Patent EP2559767	NA	coding protein	psRNATarget
HI404157.1	ncRNA:24   UA-CUCGUACAGGUCUAAGUAACAU   1   ||-|||=|||||||||||||||||| targets:44   AUAGAGUAUGUCCAGAUUCAUUGUA   68 Target Full Sequence	1.0	Sequence 2282 from Patent EP2074227	NA	coding protein	psRNATarget
AK288873.1	ncRNA:24   UA---CUCGUACAGGUCUAAGUAACAU   1   ||---||||||||||||||||||*||| targets:2454   AUAGGGAGCAUGUCCAGAUUCAUAGUA   2480 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090078I24, full insert sequence	NA	coding protein	psRNATarget
XM_015778240.1	ncRNA:24   UA-CUCGUACAGGUCUAAGUAACAU   1   ||-|||=|||||||||||||||*|| targets:899   AUAGAGUAUGUCCAGAUUCAUUAUA   923 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g13880 (LOC9267950), mRNA	pentatricopeptide repeat-containing protein At3g13880(LOC9267950)	coding protein	psRNATarget
XM_015755545.1	ncRNA:24   UAC--UCGUACAGGUCUAAGUAACAU   1   |||--||=*||||||||||||||||| targets:1588   AUGGGAGUCUGUCCAGAUUCAUUGUA   1613 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group ATP-dependent 6-phosphofructokinase 2 (LOC4347383), mRNA	ATP-dependent 6-phosphofructokinase 2(LOC4347383)	coding protein	psRNATarget
AK067140.1	ncRNA:24   UACUCGUACAGGUCUAAGUAACAU   1   ||||**||||=||||||||||||| targets:2548   AUGAUGAUGUUCAGAUUCAUUGUA   2571 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013094I22, full insert sequence	NA	coding protein	psRNATarget
AK063200.1	ncRNA:24   UACUCGUACAGGUCUAAGUAACAU   1   *||=*|*||||||||||||||||| targets:514   CUGGACUUGUCCAGAUUCAUUGUA   537 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:001-112-C07, full insert sequence	NA	coding protein	psRNATarget
LQ236420.1	ncRNA:24   UACUCGUACAGGUCUAAGUAACAU   1   =**=|=*||||||||||||||||| targets:47   GACGGUCUGUCCAGAUUCAUUGUA   70 Target Full Sequence	2.0	Sequence 2415 from Patent EP2985353	NA	coding protein	psRNATarget
JB164751.1	ncRNA:24   UACUCGUACAGGUCUAAGUAACAU   1   =**=|=*||||||||||||||||| targets:47   GACGGUCUGUCCAGAUUCAUUGUA   70 Target Full Sequence	2.0	Sequence 2415 from Patent EP2559767	NA	coding protein	psRNATarget
HI404290.1	ncRNA:24   UACUCGUACAGGUCUAAGUAACAU   1   =**=|=*||||||||||||||||| targets:47   GACGGUCUGUCCAGAUUCAUUGUA   70 Target Full Sequence	2.0	Sequence 2415 from Patent EP2074227	NA	coding protein	psRNATarget
AK288793.1	ncRNA:24   UACUCGUACAGGUCUAAGUAACAU   1   |||--=||||||||||||||*||| targets:854   AUG--UAUGUCCAGAUUCAUAGUA   875 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090070C08, full insert sequence	NA	coding protein	psRNATarget
LQ235647.1	ncRNA:24   UACUCGUACAGGUCUAAGUAACAU   1   ***|*|||||||||||||=||||* targets:44   CCCAUCAUGUCCAGAUUCGUUGUU   67 Target Full Sequence	2.5	Sequence 1642 from Patent EP2985353	NA	coding protein	psRNATarget
JB163978.1	ncRNA:24   UACUCGUACAGGUCUAAGUAACAU   1   ***|*|||||||||||||=||||* targets:44   CCCAUCAUGUCCAGAUUCGUUGUU   67 Target Full Sequence	2.5	Sequence 1642 from Patent EP2559767	NA	coding protein	psRNATarget
HI403517.1	ncRNA:24   UACUCGUACAGGUCUAAGUAACAU   1   ***|*|||||||||||||=||||* targets:44   CCCAUCAUGUCCAGAUUCGUUGUU   67 Target Full Sequence	2.5	Sequence 1642 from Patent EP2074227	NA	coding protein	psRNATarget
HI403786.1	ncRNA:24   UACUCGUACAGGUCUAAGUAACAU   1   ||-|*||||||||||||||||*|= targets:3   AU-AUCAUGUCCAGAUUCAUUAUG   25 Target Full Sequence	2.5	Sequence 1911 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235916.1	ncRNA:24   UACUCGUACAGGUCUAAGUAACAU   1   ||-|*||||||||||||||||*|= targets:3   AU-AUCAUGUCCAGAUUCAUUAUG   25 Target Full Sequence	2.5	Sequence 1911 from Patent EP2985353	NA	coding protein	psRNATarget
JB164247.1	ncRNA:24   UACUCGUACAGGUCUAAGUAACAU   1   ||-|*||||||||||||||||*|= targets:3   AU-AUCAUGUCCAGAUUCAUUAUG   25 Target Full Sequence	2.5	Sequence 1911 from Patent EP2559767	NA	coding protein	psRNATarget