Search result

BaseInfo

ncRNA ID	novel_osa_miR1685
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:7597764-7597946 [-]
Reference genome	IRGSP-1.0
Source	SRR1743002
Length	23
Mature sequence(if miRNA)	161 - GAAAACUACCGUUGGAUCGAGAA - 183
Stem-loop(if miRNA)	-- A      C G                  G   AG                     GUUAAAAUAA     --   -             -CU  G   G AAACUA C UUGGAUCGAGAAGUGGAU UUC  GAUUCGUCCACGUCACUAUGA          CUCUA  AGU AAAAUUUUAACUU   GA U   | |||||| | |||||||||||||||||| |||  |||||||||||||||||||||          |||||  ||| |||||||||||||   || G   C UUUGAU G AACCUAGUUCUUUAUUUA AAG  CUAAGCAGGUGCAGUGGUACU          GAGGU  UCA UUUUAAAAUUGAG   CU A AA C      A A                  G   CU                     ----------     AC   A             CGU  A
Stem-loop sequence	GAAAACUACCGUUGGAUCGAGAAGUGGAUGUUCAGGAUUCGUCCACGUCACUAUGAGUUAAAAUAACUCUAAGUAAAAUUUUAACUUCUGAGUGAAUCUGCGAGUUAAAAUUUUAACUCAUGGAGUCAUGGUGACGUGGACGAAUCUCGAAGAUUUAUUUCUUGAUCCAAAGAUAGUUUCCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK062635.1	ncRNA:23   AAGAGCUAGGUUGCCAUCAAAAG   1   ||||||||||||=|||||||||| targets:77   UUCUCGAUCCAAUGGUAGUUUUC   99 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-105-D01, full insert sequence	NA	coding protein	psRNATarget
XM_015755494.1	ncRNA:23   AAGAGCUAGGUUGCCAUCAAAAG   1   ||=|||||||||||||||||||= targets:508   UUUUCGAUCCAACGGUAGUUUUU   530 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277973 (LOC107277973), transcript variant X1, mRNA	uncharacterized LOC107277973(LOC107277973)	coding protein	psRNATarget
CT835866.1	ncRNA:23   AAGAGCUAGGUUGCCAUCAAAAG   1   |||||||||=|||||||||||*| targets:299   UUCUCGAUCUAACGGUAGUUUCC   321 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI027A04, full insert sequence	NA	coding protein	psRNATarget
XM_015755327.1	ncRNA:23   AAGAGCUAGGUUGCCAUCAAAAG   1   |||||||||=|||||||||||*| targets:1594   UUCUCGAUCUAACGGUAGUUUCC   1616 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable cinnamyl alcohol dehydrogenase 8D (LOC4346993), mRNA	probable cinnamyl alcohol dehydrogenase 8D(LOC4346993)	coding protein	psRNATarget
AK288582.1	ncRNA:23   AAGAGCUAGGUUGCCAUCAAAAG   1   |||*|||||=|||||||||||*| targets:211   UUCACGAUCUAACGGUAGUUUCC   233 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090049I19, full insert sequence	NA	coding protein	psRNATarget