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BaseInfo

ncRNA ID	novel_osa_miR1682
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:19817319-19817372 [+]
Reference genome	IRGSP-1.0
Source	SRR1743002;SRR2040411;SRR2857729
Length	22
Mature sequence(if miRNA)	1 - UCAUAGUACAAUGAAUUUGGAC - 22
Stem-loop(if miRNA)	--  A      A             AA   UC UAGUAC AUGAAUUUGGACA  G   || |||||| |||||||||||||   AG AUUAUG UGCUUAGAUCUGU  G AU  G      A             AU
Stem-loop sequence	UCAUAGUACAAUGAAUUUGGACAAAGGUAUGUCUAGAUUCGUAGUAUUAGGAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288458.1	ncRNA:22   CAGGUUUAAGUAACAUGAUACU   1   |||=||||||=||||||||||| targets:387   GUCUAAAUUCGUUGUACUAUGA   408 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090035E13, full insert sequence	NA	coding protein	psRNATarget
HI403973.1	ncRNA:22   CAGGUUUAAGUAACAUGAUACU   1   |||=|=|||||||||||||||| targets:85   GUCUAGAUUCAUUGUACUAUGA   106 Target Full Sequence	2.0	Sequence 2098 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236103.1	ncRNA:22   CAGGUUUAAGUAACAUGAUACU   1   |||=|=|||||||||||||||| targets:85   GUCUAGAUUCAUUGUACUAUGA   106 Target Full Sequence	2.0	Sequence 2098 from Patent EP2985353	NA	coding protein	psRNATarget
JB164434.1	ncRNA:22   CAGGUUUAAGUAACAUGAUACU   1   |||=|=|||||||||||||||| targets:85   GUCUAGAUUCAUUGUACUAUGA   106 Target Full Sequence	2.0	Sequence 2098 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236396.1	ncRNA:22   CAGGUUUAAGUAACAUGAUACU   1   |||=|||||||||||=|||||| targets:46   GUCUAAAUUCAUUGUGCUAUGA   67 Target Full Sequence	2.5	Sequence 2391 from Patent EP2985353	NA	coding protein	psRNATarget
JB164727.1	ncRNA:22   CAGGUUUAAGUAACAUGAUACU   1   |||=|||||||||||=|||||| targets:46   GUCUAAAUUCAUUGUGCUAUGA   67 Target Full Sequence	2.5	Sequence 2391 from Patent EP2559767	NA	coding protein	psRNATarget
HI404266.1	ncRNA:22   CAGGUUUAAGUAACAUGAUACU   1   |||=|||||||||||=|||||| targets:46   GUCUAAAUUCAUUGUGCUAUGA   67 Target Full Sequence	2.5	Sequence 2391 from Patent EP2074227	NA	coding protein	psRNATarget
AK241651.1	ncRNA:22   CAGGUUUAAGUAACAUGAUACU   1   ||==|=|||||||||||||||| targets:1017   GUUUAGAUUCAUUGUACUAUGA   1038 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J065191A02, full insert sequence	NA	coding protein	psRNATarget
HI404290.1	ncRNA:22   CAGGUUUAAGUAACAUGAUACU   1   |||||=|||||||||||||*|| targets:55   GUCCAGAUUCAUUGUACUAGGA   76 Target Full Sequence	2.5	Sequence 2415 from Patent EP2074227	NA	coding protein	psRNATarget
JB164751.1	ncRNA:22   CAGGUUUAAGUAACAUGAUACU   1   |||||=|||||||||||||*|| targets:55   GUCCAGAUUCAUUGUACUAGGA   76 Target Full Sequence	2.5	Sequence 2415 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236420.1	ncRNA:22   CAGGUUUAAGUAACAUGAUACU   1   |||||=|||||||||||||*|| targets:55   GUCCAGAUUCAUUGUACUAGGA   76 Target Full Sequence	2.5	Sequence 2415 from Patent EP2985353	NA	coding protein	psRNATarget
JB164618.1	ncRNA:22   CAGGUUUAAGUAACAUGAUACU   1   |||||=|||||||||||||*|| targets:53   GUCCAGAUUCAUUGUACUAGGA   74 Target Full Sequence	2.5	Sequence 2282 from Patent EP2559767	NA	coding protein	psRNATarget
HI404157.1	ncRNA:22   CAGGUUUAAGUAACAUGAUACU   1   |||||=|||||||||||||*|| targets:53   GUCCAGAUUCAUUGUACUAGGA   74 Target Full Sequence	2.5	Sequence 2282 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236287.1	ncRNA:22   CAGGUUUAAGUAACAUGAUACU   1   |||||=|||||||||||||*|| targets:53   GUCCAGAUUCAUUGUACUAGGA   74 Target Full Sequence	2.5	Sequence 2282 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015787953.1	ncRNA:22   CAGGUUUAAGUAACAUGAUACU   1   ||==||||||||*||||||||| targets:2790   GUUUAAAUUCAUAGUACUAUGA   2811 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group U-box domain-containing protein 52 (LOC4340371), transcript variant X1, mRNA	U-box domain-containing protein 52(LOC4340371)	coding protein	psRNATarget
HI403709.1	ncRNA:22   CAGGUUUAAGUAACAUGAUACU   1   ||||||||*||||||||||*|| targets:48   GUCCAAAUACAUUGUACUAAGA   69 Target Full Sequence	2.5	Sequence 1834 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235839.1	ncRNA:22   CAGGUUUAAGUAACAUGAUACU   1   ||||||||*||||||||||*|| targets:48   GUCCAAAUACAUUGUACUAAGA   69 Target Full Sequence	2.5	Sequence 1834 from Patent EP2985353	NA	coding protein	psRNATarget
JB164170.1	ncRNA:22   CAGGUUUAAGUAACAUGAUACU   1   ||||||||*||||||||||*|| targets:48   GUCCAAAUACAUUGUACUAAGA   69 Target Full Sequence	2.5	Sequence 1834 from Patent EP2559767	NA	coding protein	psRNATarget