Search result

BaseInfo

ncRNA ID	novel_osa_miR1680
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:18158441-18158490 [+]
Reference genome	IRGSP-1.0
Source	SRR1743002
Length	25
Mature sequence(if miRNA)	1 - GUGACAUUUUCUAGUACAAUGAAUC - 25
Stem-loop(if miRNA)	--                  A   A   GUGACAUUUUCUAGUACA UGA U   |||||||||||||||||| ||| C   CACUGUAAGAGAUCGUGU GCU U UC                  -   U
Stem-loop sequence	GUGACAUUUUCUAGUACAAUGAAUCUUUCGUGUGCUAGAGAAUGUCACCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015759388.1	ncRNA:25   CUAAGUAACAUGAUCUUUUACAGUG   1   |||||||||||||||||*||||||| targets:454   GAUUCAUUGUACUAGAAUAUGUCAC   478 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group ent-cassadiene C2-hydroxylase-like (LOC4348721), transcript variant X2, mRNA	ent-cassadiene C2-hydroxylase-like(LOC4348721)	coding protein	psRNATarget
LQ236010.1	ncRNA:25   CUAAGUAACAUGAUCUUUUACAGUG   1   |||||=|||||=|||||*||||||| targets:61   GAUUCGUUGUAUUAGAAUAUGUCAC   85 Target Full Sequence	2.5	Sequence 2005 from Patent EP2985353	NA	coding protein	psRNATarget
JB164341.1	ncRNA:25   CUAAGUAACAUGAUCUUUUACAGUG   1   |||||=|||||=|||||*||||||| targets:61   GAUUCGUUGUAUUAGAAUAUGUCAC   85 Target Full Sequence	2.5	Sequence 2005 from Patent EP2559767	NA	coding protein	psRNATarget
HI403880.1	ncRNA:25   CUAAGUAACAUGAUCUUUUACAGUG   1   |||||=|||||=|||||*||||||| targets:61   GAUUCGUUGUAUUAGAAUAUGUCAC   85 Target Full Sequence	2.5	Sequence 2005 from Patent EP2074227	NA	coding protein	psRNATarget
AK288796.1	ncRNA:25   CUAAGUAACAUGAUCUUUUACAGUG   1   ||||||||*||||||||*||||||| targets:597   GAUUCAUUAUACUAGAAUAUGUCAC   621 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
XM_015774735.1	ncRNA:25   CUAAGUAACAUGAUCUUUUACAGUG   1   *|||==|||||||||||||*||||| targets:521   UAUUUGUUGUACUAGAAAACGUCAC   545 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group auxin-responsive protein SAUR41-like (LOC107278624), mRNA	auxin-responsive protein SAUR41-like(LOC107278624)	coding protein	psRNATarget
AK061182.1	ncRNA:25   CUAAGUAACAUGAUCUUUUACAGUG   1   ||||==||*||||||||*||||||| targets:878   GAUUUGUUAUACUAGAAUAUGUCAC   902 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:006-209-D09, full insert sequence	NA	coding protein	psRNATarget