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BaseInfo

ncRNA ID	novel_osa_miR1678
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:11691301-11691411 [-]
Reference genome	IRGSP-1.0
Source	SRR1743002;SRR1849784;SRR3123648;SRR5351737;SRR1738235
Length	23
Mature sequence(if miRNA)	89 - CGUGAGAUGAAUCUUUUGAGCCU - 111
Stem-loop(if miRNA)	--                               C  G       ---AUAAAA   U   CGUGAGAUGAAUCUUUUGAGCCUAAUUAGUC AU AUUAGUA         UGC A   ||||||||||||||||||||||||||||||| || |||||||         |||   GCACUCUGCUUAGAAAACUCGGAUUAAUUAG UA UAAUCGU         AUG C UG                               A  G       GUAUAACCA   A
Stem-loop sequence	CGUGAGAUGAAUCUUUUGAGCCUAAUUAGUCCAUGAUUAGUAAUAAAAUGCUACAGUAACCAAUAUGUGCUAAUGAUAGAUUAAUUAGGCUCAAAAGAUUCGUCUCACGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288244.1	ncRNA:23   UCCGAGUUUUCUAAGUAGAGUGC   1   ||||||||||||||||||||||| targets:1691   AGGCUCAAAAGAUUCAUCUCACG   1713 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090014C01, full insert sequence	NA	coding protein	psRNATarget
AK120219.1	ncRNA:23   UCCGAGUUUUCUAAGUAGAGUGC   1   ||||||||||||||||||||=|| targets:612   AGGCUCAAAAGAUUCAUCUCGCG   634 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013041B17, full insert sequence	NA	coding protein	psRNATarget
XM_015775081.1	ncRNA:23   UCCGAGUUUUCUAAGUAGAGUGC   1   |||||||||||||||=||||||* targets:1120   AGGCUCAAAAGAUUCGUCUCACA   1142 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group methylesterase 3 (LOC4324570), mRNA	methylesterase 3(LOC4324570)	coding protein	psRNATarget
AK105537.1	ncRNA:23   UCCGAGUUUUCUAAGUAGAGUGC   1   |||||=||||||||||||||||* targets:687   AGGCUUAAAAGAUUCAUCUCACC   709 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:001-127-H05, full insert sequence	NA	coding protein	psRNATarget
AK241322.1	ncRNA:23   UCCGAGUUUUCUAAGUAGAGUGC   1   ||||||||||||||||||||=|* targets:2142   AGGCUCAAAAGAUUCAUCUCGCU   2164 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065142K05, full insert sequence	NA	coding protein	psRNATarget
XM_015757506.1	ncRNA:23   UCCGAGUUUUCUAAGUAGAGUGC   1   ||||||||||||||||||||=|* targets:2135   AGGCUCAAAAGAUUCAUCUCGCU   2157 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9268466 (LOC9268466), transcript variant X1, mRNA	uncharacterized LOC9268466(LOC9268466)	coding protein	psRNATarget
XM_015778499.1	ncRNA:23   UCCGAGUUUUCUAAGUAGAGUGC   1   ||*||=||||||||||||||=|| targets:24   AGACUUAAAAGAUUCAUCUCGCG   46 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group LRR receptor-like serine/threonine-protein kinase ERECTA (LOC4334979), transcript variant X3, mRNA	LRR receptor-like serine/threonine-protein kinase ERECTA(LOC4334979)	coding protein	psRNATarget
LQ236057.1	ncRNA:23   UCCGAGUUUUCUAAGUAGAGUGC   1   ||*||||||||||||=||||||* targets:91   AGCCUCAAAAGAUUCGUCUCACA   113 Target Full Sequence	2.5	Sequence 2052 from Patent EP2985353	NA	coding protein	psRNATarget
HI403927.1	ncRNA:23   UCCGAGUUUUCUAAGUAGAGUGC   1   ||*||||||||||||=||||||* targets:91   AGCCUCAAAAGAUUCGUCUCACA   113 Target Full Sequence	2.5	Sequence 2052 from Patent EP2074227	NA	coding protein	psRNATarget
JB164388.1	ncRNA:23   UCCGAGUUUUCUAAGUAGAGUGC   1   ||*||||||||||||=||||||* targets:91   AGCCUCAAAAGAUUCGUCUCACA   113 Target Full Sequence	2.5	Sequence 2052 from Patent EP2559767	NA	coding protein	psRNATarget
AK099773.1	ncRNA:23   UCCGAGUUUUCUAAGUAGAGUGC   1   ||*||=||||||||||||||=|| targets:721   AGACUUAAAAGAUUCAUCUCGCG   743 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013095E04, full insert sequence	NA	coding protein	psRNATarget
AK065510.1	ncRNA:23   UCCGAGUUUUCUAAGUAGAGUGC   1   ||*||=||||||||||||||=|| targets:791   AGACUUAAAAGAUUCAUCUCGCG   813 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013030L03, full insert sequence	NA	coding protein	psRNATarget
AK065982.1	ncRNA:23   UCCGAGUUUUCUAAGUAGAGUGC   1   ||*||||||||||||=||||||* targets:2875   AGACUCAAAAGAUUCGUCUCACA   2897 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013045J05, full insert sequence	NA	coding protein	psRNATarget
AK288737.1	ncRNA:23   UCCGAGUUUUCUAAGUAGAGUGC   1   ||*|||||*|||||||||||=|| targets:1470   AGACUCAAUAGAUUCAUCUCGCG   1492 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090063M20, full insert sequence	NA	coding protein	psRNATarget