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BaseInfo

ncRNA ID	novel_osa_miR1663
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:13624815-13624992 [+]
Reference genome	IRGSP-1.0
Source	SRR1743000;SRR2097779
Length	24
Mature sequence(if miRNA)	155 - AAAAUGCAUGGGGAAUUAUGGUGG - 178
Stem-loop(if miRNA)	--    A                        AUCAUUC         UA       UA         AG    UGAAA   ---AG   AA   ACCA AAUUCUCCAUGCAUUUUGUAUUCU       UUUGAUAAU  AGGAAUU  AUUAGAUUU  GGUU     UGU     CUU  A   |||| ||||||||||||||||||||||||       |||||||||  |||||||  |||||||||  ||||     |||     |||   UGGU UUAAGGGGUACGUAAAACAUAAGA       AAACUAUUG  UCCUUGA  UAAUUUAGA  CCGG     AUA     GAA  U GG    A                        CACUACC         GA       UG         CG    -UUAG   GUUAA   GG
Stem-loop sequence	ACCAAAAUUCUCCAUGCAUUUUGUAUUCUAUCAUUCUUUGAUAAUUAAGGAAUUUAAUUAGAUUUAGGGUUUGAAAUGUAGCUUAAAUGGAAGAAUUGAUAGAUUGGCCGCAGAUUUAAUGUAGUUCCUAGGUUAUCAAACCAUCACAGAAUACAAAAUGCAUGGGGAAUUAUGGUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015759904.1	ncRNA:24   GGUGGUAUUAAGGGGUACGUAAAA   1   *|||||*|||||=||||||||||| targets:2867   ACACCAAAAUUCUCCAUGCAUUUU   2890 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107279254 (LOC107279254), mRNA	uncharacterized LOC107279254(LOC107279254)	coding protein	psRNATarget
AK288695.1	ncRNA:24   GGUGGUAUUAAGGGGUACGUAAAA   1   *|||||*|||||=||||||||||| targets:2873   ACACCAAAAUUCUCCAUGCAUUUU   2896 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090060N21, full insert sequence	NA	coding protein	psRNATarget
XM_015758827.1	ncRNA:24   GGUGGUAUUAAGGGGUACGUAAAA   1   =||=|||*|*|||||||||||||* targets:2272   UCAUCAUUAAUCCCCAUGCAUUUC   2295 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group DNA-directed RNA polymerase I subunit 2 (LOC9270457), transcript variant X2, mRNA	DNA-directed RNA polymerase I subunit 2(LOC9270457)	coding protein	psRNATarget
XM_015758826.1	ncRNA:24   GGUGGUAUUAAGGGGUACGUAAAA   1   =||=|||*|*|||||||||||||* targets:2807   UCAUCAUUAAUCCCCAUGCAUUUC   2830 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group DNA-directed RNA polymerase I subunit 2 (LOC9270457), transcript variant X1, mRNA	DNA-directed RNA polymerase I subunit 2(LOC9270457)	coding protein	psRNATarget
AK318583.1	ncRNA:24   GGUGGUAUUAAGGGGUACGUAAAA   1   =||=|||*|*|||||||||||||* targets:3529   UCAUCAUUAAUCCCCAUGCAUUUC   3552 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090099O18, full insert sequence	NA	coding protein	psRNATarget