ncRNA ID | novel_osa_miR1660 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr1:42783269-42783415 [+] |
Reference genome | IRGSP-1.0 |
Source | SRR1743000 |
Length | 24 |
Mature sequence(if miRNA) | 124 - GAUGUCGUGGAUGAAUCUCAGCCA - 147 |
Stem-loop(if miRNA) |
--  CA             U              A        -  ----U   AAUUUUAACUCCUGAAAGUUUA   GC  AGAUUCAUUCAUG CAUCACGGGUUAAA UUUAACUC CA     UAA                      C   ||  ||||||||||||| |||||||||||||| |||||||| ||     |||   CG  UCUAAGUAGGUGC GUAGUGCUCAAUUU AAAUUGAG GU     UGA                      U AC  AC             U              G        C  CUAAA   GUCCUCAAUUUUAAAAUGACCC |
Stem-loop sequence | GCCAAGAUUCAUUCAUGUCAUCACGGGUUAAAAUUUAACUCCAUUAAAAUUUUAACUCCUGAAAGUUUACUCCCAGUAAAAUUUUAACUCCUGAGUAAAUCUGCGAGUUAAAGUUUAACUCGUGAUGUCGUGGAUGAAUCUCAGCCA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_015771677.1 |
|
1.5 | PREDICTED: Oryza sativa Japonica Group protein disulfide isomerase-like 5-3 (LOC4329624), mRNA | protein disulfide isomerase-like 5-3(LOC4329624) | coding protein | psRNATarget |