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BaseInfo

ncRNA ID novel_osa_miR1660
Species Oryza sativa
Class miRNA
Genome position Chr1:42783269-42783415 [+]
Reference genome IRGSP-1.0
Source SRR1743000
Length 24
Mature sequence(if miRNA) 124 - GAUGUCGUGGAUGAAUCUCAGCCA - 147
Stem-loop(if miRNA) --  CA             U              A        -  ----U   AAUUUUAACUCCUGAAAGUUUA
  GC  AGAUUCAUUCAUG CAUCACGGGUUAAA UUUAACUC CA     UAA                      C
  ||  ||||||||||||| |||||||||||||| |||||||| ||     |||
  CG  UCUAAGUAGGUGC GUAGUGCUCAAUUU AAAUUGAG GU     UGA                      U
AC  AC             U              G        C  CUAAA   GUCCUCAAUUUUAAAAUGACCC
Stem-loop sequence GCCAAGAUUCAUUCAUGUCAUCACGGGUUAAAAUUUAACUCCAUUAAAAUUUUAACUCCUGAAAGUUUACUCCCAGUAAAAUUUUAACUCCUGAGUAAAUCUGCGAGUUAAAGUUUAACUCGUGAUGUCGUGGAUGAAUCUCAGCCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015771677.1
ncRNA:24   ACCGACUCUAAGUAGGUGCUGUAG   1
  *||||||||||||||||||*||||
targets:1564   CGGCUGAGAUUCAUCCACGUCAUC   1587

1.5 PREDICTED: Oryza sativa Japonica Group protein disulfide isomerase-like 5-3 (LOC4329624), mRNA protein disulfide isomerase-like 5-3(LOC4329624) coding protein psRNATarget