A ncRNA database for oil producing plants

Search result

BaseInfo

ncRNA ID	novel_osa_miR1652
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:13058637-13058706 [-]
Reference genome	IRGSP-1.0
Source	SRR1743000
Length	19
Mature sequence(if miRNA)	1 - AUUAUGGACUAAUUAGACU - 19
Stem-loop(if miRNA)	--C A CC A UGG CUAAUUA UCCA AUUAGC CAUG GUUAA \|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\| \|\|\|\| \|\|\|\|U GAUUAAU AGGU UAAUCG GUAU CGAUG UCA C AU - UCA
Stem-loop sequence	CCUAAUUAAUCCACCAUUAGCACAUGUGGGUUAAUGUAGCACUUAUGGCUAAUUAUGGACUAAUUAGACU

Targets Info

Target Acc

Alignment

Exception

Target Description

Target Gene Name

Target Type

Method

AK072891.1

ncRNA:19	UCAGAUUAAUCAGGUAUUA	1
	\|\|*\|\|\|\|\|\|\|\|\|\|\|\|\|=\|\|
targets:888	AGACUAAUUAGUCCAUGAU	906

2.5

Oryza sativa Japonica Group cDNA clone:J023147C03, full insert sequence

coding protein

psRNATarget

AK071825.1

ncRNA:19	UCAGAUUAAUCAGGUAUUA	1
	\|\|*\|\|\|\|\|\|\|\|\|\|\|\|\|=\|\|
targets:1331	AGCCUAAUUAGUCCAUGAU	1349

2.5

Oryza sativa Japonica Group cDNA clone:J023115H13, full insert sequence

coding protein

psRNATarget

AK064090.1

ncRNA:19	UCAGAUUAAUCAGGUAUUA	1
	\|\|*\|\|\|\|\|\|\|\|\|\|\|\|\|=\|\|
targets:1273	AGCCUAAUUAGUCCAUGAU	1291

2.5

Oryza sativa Japonica Group cDNA clone:002-100-D06, full insert sequence

coding protein

psRNATarget

CT831729.1

ncRNA:19	UCAGAUUAAUCAGGUAUUA	1
	\|\|*\|\|\|\|\|\|\|\|\|\|\|\|\|=\|\|
targets:388	AGCCUAAUUAGUCCAUGAU	406

2.5

Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA117A02, full insert sequence

coding protein

psRNATarget

AK064965.1

ncRNA:19	UCAGAUUAAUCAGGUAUUA	1
	\|**\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1160	ACCCUAAUUAGUCCAUAAU	1178

3.0

Oryza sativa Japonica Group cDNA clone:J013001B01, full insert sequence

coding protein

psRNATarget

XM_015778734.1

ncRNA:19	UCAGAUUAAUCAGGUAUUA	1
	\|**\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1159	ACCCUAAUUAGUCCAUAAU	1177

3.0

PREDICTED: Oryza sativa Japonica Group very-long-chain 3-oxoacyl-CoA reductase 1 (LOC4334949), transcript variant X1, mRNA

very-long-chain 3-oxoacyl-CoA reductase 1(LOC4334949)

coding protein

psRNATarget

AK288241.1

ncRNA:19	UCAGAUUAAUCAGGUAUUA	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:606	AGCCUAAUUAAUCCAUAAU	624

2.5

Oryza sativa Japonica Group cDNA, clone: J090013L13, full insert sequence

coding protein

psRNATarget

XM_015781196.1

ncRNA:19	UCAGAUUAAUCAGGUAUUA	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:2086	AGCCUAAUUAAUCCAUAAU	2104

2.5

PREDICTED: Oryza sativa Japonica Group GATA transcription factor 6 (LOC4336532), mRNA

GATA transcription factor 6(LOC4336532)

coding protein

psRNATarget

AK073850.1

ncRNA:19	UCAGAUUAAUCAGGUAUUA	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1591	AGCCUAAUUAAUCCAUAAU	1609

2.5

Oryza sativa Japonica Group cDNA clone:J033073F11, full insert sequence

coding protein

psRNATarget

XM_015767213.1

ncRNA:19	UCAGAUUAAUCAGGUAUUA	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1876	AGCCUAAUUAAUCCAUAAU	1894

2.5

PREDICTED: Oryza sativa Japonica Group beclin-1-like protein (LOC4324394), transcript variant X1, mRNA

beclin-1-like protein(LOC4324394)

coding protein

psRNATarget

XM_015767222.1

ncRNA:19	UCAGAUUAAUCAGGUAUUA	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1858	AGCCUAAUUAAUCCAUAAU	1876

2.5

PREDICTED: Oryza sativa Japonica Group beclin-1-like protein (LOC4324394), transcript variant X2, mRNA

beclin-1-like protein(LOC4324394)

coding protein

psRNATarget

AK101033.1

ncRNA:19	UCAGAUUAAUCAGGUAUUA	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1859	AGCCUAAUUAAUCCAUAAU	1877

2.5

Oryza sativa Japonica Group cDNA clone:J023150N19, full insert sequence

coding protein

psRNATarget

XM_015788312.1

ncRNA:19	UCAGAUUAAUCAGGUAUUA	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1608	AGCCUAAUUAAUCCAUAAU	1626

2.5

PREDICTED: Oryza sativa Japonica Group serine/arginine-rich splicing factor SR45a (LOC4342102), transcript variant X1, mRNA

serine/arginine-rich splicing factor SR45a(LOC4342102)

coding protein

psRNATarget

CT833304.1

ncRNA:19	UCAGAUUAAUCAGGUAUUA	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1258	AGCCUAAUUAAUCCAUAAU	1276

2.5

Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN010D02, full insert sequence

coding protein

psRNATarget

AK103177.1

ncRNA:19	UCAGAUUAAUCAGGUAUUA	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1252	AGCCUAAUUAAUCCAUAAU	1270

2.5

Oryza sativa Japonica Group cDNA clone:J033121H17, full insert sequence

coding protein

psRNATarget

CT837623.1

ncRNA:19	UCAGAUUAAUCAGGUAUUA	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:592	AGCCUAAUUAAUCCAUAAU	610

2.5

Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN019I07, full insert sequence

coding protein

psRNATarget