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BaseInfo

ncRNA ID	novel_osa_miR1650
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:24659890-24660086 [-]
Reference genome	IRGSP-1.0
Source	SRR1743000;SRR2040388;SRR2040394;SRR2040402;SRR2040405;SRR2857728;SRR2857729;SRR2857732;SRR2857733;SRR2857735;SRR3123645;SRR3123650;SRR5049781;SRR5351739;SRR5351742;SRR1738226;SRR1738239
Length	24
Mature sequence(if miRNA)	174 - ACGUAGACUAAUGACAAAACUCAU - 197
Stem-loop(if miRNA)	--AC            C      C   CC    CACU GA  U     C    CG   C A     C                    CU     -A   U     GUAGACUAAUGA AAAACU AUU  AUAA    G  CU AUUCG GAGA  AAU U UUGAG CUAAUUAAUCUAUGAUUAGC  AUAUG  UGC A     |||||||||||| |||||| |||  ||||    |  || ||||| ||||  ||| | ||||| ||||||||||||||||||||  |||||  |||     CAUUUGAUUAUU UUUUGA UAA  UAUU    C  GA UAAGC CUCU  UUA A AAUUC GAUUGAUUAGAUAUUAAUCG  UGUAC  AUG U UUUA            A      U   UA    UACU UC  U     A    AU   A A     U                    --     AA   A
Stem-loop sequence	ACGUAGACUAAUGACAAAACUCAUUCCAUAACACUGGACUUAUUCGCGAGACGAAUCUAUUGAGCCUAAUUAAUCUAUGAUUAGCCUAUAUGAUGCUAUAGUAAACAUGUGCUAAUUAUAGAUUAGUUAGUCUUAAAAAAUUUAUCUCACGAAUUAGCUCUCAUUUAUAUAAUUAGUUUUAUUAUUAGUUUACAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288236.1	ncRNA:24   UACUCAAAACAGUAAUCAGAUGCA   1   |||*|||||||||||||||||||| targets:1883   AUGUGUUUUGUCAUUAGUCUACGU   1906 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090013E07, full insert sequence	NA	coding protein	psRNATarget
AK119753.1	ncRNA:24   UACUCAAAACAGUAAUCAGAUGCA   1   ||**|||||||=|||||||||||| targets:2057   AUUUGUUUUGUUAUUAGUCUACGU   2080 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-167-E02, full insert sequence	NA	coding protein	psRNATarget
AK288617.1	ncRNA:24   UACUCAAAACAGUAAUCAGAUGCA   1   ||**|||||||=|||||||||||* targets:2721   AUUCGUUUUGUUAUUAGUCUACGC   2744 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090054B15, full insert sequence	NA	coding protein	psRNATarget
XM_015764825.1	ncRNA:24   UACUCAAAACAGUAAUCAGAUGCA   1   ||***||||||=|||||||||||| targets:103   AUUUAUUUUGUUAUUAGUCUACGU   126 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group pre-mRNA-splicing factor CWC22 homolog (LOC4351904), mRNA	pre-mRNA-splicing factor CWC22 homolog(LOC4351904)	coding protein	psRNATarget
AM778048.1	ncRNA:24   UACUCAAAACAGUAAUCAGAUGCA   1   ||***||||||=|||||||||||| targets:103   AUUUAUUUUGUUAUUAGUCUACGU   126 Target Full Sequence	1.5	Oryza sativa Japonica Group mRNA for putative pre-mRNA-splicing factor cwc-22 (Os12g15420 gene), cultivar Azucena	NA	coding protein	psRNATarget
AK067578.1	ncRNA:24   UACUCAAAACAGUAAUCAGAUGCA   1   ||**|||||*|=|||||||||||| targets:1800   AUUUGUUUUAUUAUUAGUCUACGU   1823 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013110M15, full insert sequence	NA	coding protein	psRNATarget