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BaseInfo

ncRNA ID	novel_osa_miR1648
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:42534358-42534519 [+]
Reference genome	IRGSP-1.0
Source	SRR1743000
Length	24
Mature sequence(if miRNA)	1 - AAACUACUUUAAGUUUGACUAAGU - 24
Stem-loop(if miRNA)	--     A            C  A    A    U   U        GUUUA    ACCAAAUUAGUUUCAUUAAAUCAAUAG   AAACU CUUUAAGUUUGA UA GUUU UAGA AAA AUAGUAAU     UAAU                           U   ||||| |||||||||||| || |||| |||| ||| ||||||||     ||||                           U   UUUGA GAAAUUCAAACU AU CAAA AUCU UUU UAUUAUUG     AAAG                           G AG     C            A  A    C    U   U        ---AA    UUGUUUUUUUAUAAUACUUUUAUAUAA
Stem-loop sequence	AAACUACUUUAAGUUUGACUAAGUUUAUAGAUAAAUAUAGUAAUGUUUAUAAUACCAAAUUAGUUUCAUUAAAUCAAUAGUUGAAUAUAUUUUCAUAAUAUUUUUUUGUUGAAAAAGUUAUUAUUUUUUUCUACAAACAUAAUCAAACUUAAAGCAGUUUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT833782.1	ncRNA:24   UGAAUCAGUUU-GAAUUUCAUCAAA   1   |||||||||||-||||||||||||| targets:776   ACUUAGUCAAAUCUUAAAGUAGUUU   800 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN045G22, full insert sequence	NA	coding protein	psRNATarget
AK288417.1	ncRNA:24   UGAAUCAGUUUGAAUUUCAUCAAA   1   |*|||||||||||||=|||||||| targets:3225   AAUUAGUCAAACUUAGAGUAGUUU   3248 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090031J18, full insert sequence	NA	coding protein	psRNATarget
XM_015757710.1	ncRNA:24   UGAAUCAGUUUGAAUUUCAUCAAA   1   ||||=||||||||||||*|||||| targets:20   ACUUGGUCAAACUUAAAAUAGUUU   43 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278283 (LOC107278283), mRNA	uncharacterized LOC107278283(LOC107278283)	coding protein	psRNATarget
AK121032.1	ncRNA:24   UGAAUCAGUUUGAAUUUCAUCAAA   1   |=||||||||=|||||||*||||| targets:2073   AUUUAGUCAAGCUUAAAGAAGUUU   2096 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023050J15, full insert sequence	NA	coding protein	psRNATarget
XM_015769365.1	ncRNA:24   UGAAUCAGUUUGAAUUUCAUCAAA   1   |*|||||=|||||||||||||||* targets:1166   AGUUAGUUAAACUUAAAGUAGUUG   1189 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329064 (LOC4329064), mRNA	uncharacterized LOC4329064(LOC4329064)	coding protein	psRNATarget
XM_015773578.1	ncRNA:24   UGAAUCAGUUUGAAUUUCAUCAAA   1   |=||=|||*||=|||||||||||| targets:445   AUUUGGUCUAAUUUAAAGUAGUUU   468 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative F-box protein At2g02030 (LOC9271925), transcript variant X3, mRNA	putative F-box protein At2g02030(LOC9271925)	coding protein	psRNATarget
AK288527.1	ncRNA:24   UGAAUCAGUUUGAAUUUCAUCAAA   1   |*|||*|||||||||=|||||||| targets:749   AAUUAAUCAAACUUAGAGUAGUUU   772 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090044J18, full insert sequence	NA	coding protein	psRNATarget