Search result

BaseInfo

ncRNA ID	novel_osa_miR1647
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:5678774-5678880 [+]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR1555749;SRR2098823;SRR1555751;SRR2099746;SRR1556014;SRR4407953;SRR4407954;SRR1556016;SRR1556018
Length	21
Mature sequence(if miRNA)	87 - UAGGUAAUGCUAGAAAGUCUU - 107
Stem-loop(if miRNA)	--          AC      ----------      ---AUCCG   AU   -      U   GACUUUUUGG  UUAUCU          AGAUGU        UUG  CAC UAUAUA G   ||||||||||  ||||||          ||||||        |||  ||| |||||| U   CUGAAAGAUC  AAUGGA          UCUACG        GAC  GUG AUAUGU U UU          GU      UUUAAGUAUA      AUUAUUUA   CU   U      U
Stem-loop sequence	GACUUUUUGGACUUAUCUAGAUGUAUCCGUUGAUCACUAUAUAUGUUUUGUAUAUGUGUCCAGAUUUAUUAGCAUCUAUAUGAAUUUAGGUAAUGCUAGAAAGUCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT836048.1	ncRNA:21   UUCUGAAAGAUCGUAAUGGAU   1   ||||||||||||||||=|||| targets:445   AAGACUUUCUAGCAUUGCCUA   465 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA023O09, full insert sequence	NA	coding protein	psRNATarget
AK071758.1	ncRNA:21   UUCUGAAAGAUCGUAAUGGAU   1   |||||||||||||||||=||| targets:809   AAGACUUUCUAGCAUUAUCUA   829 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023112J01, full insert sequence	NA	coding protein	psRNATarget
XM_015792379.1	ncRNA:21   UUCUGAAAGAUCGUAAUGGAU   1   |||||||||||||||||=||| targets:821   AAGACUUUCUAGCAUUAUCUA   841 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g14100 (LOC4342613), mRNA	uncharacterized protein At4g14100(LOC4342613)	coding protein	psRNATarget
XM_015758512.1	ncRNA:21   UUCUGAAAGAUCGUAAUGGAU   1   ||||||||||||||||=|||| targets:1440   AAGACUUUCUAGCAUUGCCUA   1460 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group BTB/POZ and MATH domain-containing protein 1-like (LOC107279175), mRNA	BTB/POZ and MATH domain-containing protein 1-like(LOC107279175)	coding protein	psRNATarget
XM_015778732.1	ncRNA:21   UUCUGAAAGAUCGUAAUGG-AU   1   |||||||||||||||||||-|| targets:310   AAGACUUUCUAGCAUUACCAUA   331 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group hyoscyamine 6-dioxygenase (LOC4337327), mRNA	hyoscyamine 6-dioxygenase(LOC4337327)	coding protein	psRNATarget
AK288429.1	ncRNA:21   UUCUGAAAGAUCGUAA-UGGAU   1   ||||||||||||||||-||||| targets:2513   AAGACUUUCUAGCAUUUACCUA   2534 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090033C09, full insert sequence	NA	coding protein	psRNATarget
AK071625.1	ncRNA:21   UUCUGAAAGAUCGUAAUGGAU   1   |||||||||||||||||||*| targets:1304   AAGACUUUCUAGCAUUACCCA   1324 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023106F16, full insert sequence	NA	coding protein	psRNATarget
AK073998.1	ncRNA:21   UUCUGAAAGAUCGUAAUGGAU   1   |||||||||||||||||||*| targets:1510   AAGACUUUCUAGCAUUACCCA   1530 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033071H21, full insert sequence	NA	coding protein	psRNATarget
AK068435.1	ncRNA:21   UUCUGAAAGAUCGUAAUGGAU   1   |||||||||||||||||||*| targets:1576   AAGACUUUCUAGCAUUACCCA   1596 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013155N15, full insert sequence	NA	coding protein	psRNATarget
XM_015786027.1	ncRNA:21   UUCUGAAAGAUCGUAAUGGAU   1   |||||*||||||||||=|||| targets:4277   AAGACCUUCUAGCAUUGCCUA   4297 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ABC transporter C family member 8 (LOC9267441), mRNA	ABC transporter C family member 8(LOC9267441)	coding protein	psRNATarget