ncRNA ID | novel_osa_miR1643 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr5:16686276-16686382 [+] |
Reference genome | IRGSP-1.0 |
Source | SRR1743000;SRR5351737 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AGAAAUGCUAUCGCCGUUAGGGUC - 24 |
Stem-loop(if miRNA) |
--    A         CGU       --  G    UCCCAC  C  UA    UA   AGAA UGCUAUCGC   UAGGGUC  CC UCCA      GC AU  AAUG  C   |||| |||||||||   |||||||  || ||||      || ||  ||||  U   UCUU AUGGUAGCG   AUCCCAG  GG AGGU      CG UA  UUAC  U AA    C         AUU       UA  G    CAUUCA  A  UA    UU |
Stem-loop sequence | AGAAAUGCUAUCGCCGUUAGGGUCCCGUCCAUCCCACGCCAUUAAAUGUACUUUUCAUUAUAUAGCACUUACUGGAGGGAUGACCCUAUUAGCGAUGGUACUUCUAA |