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BaseInfo

ncRNA ID novel_osa_miR1642
Species Oryza sativa
Class miRNA
Genome position Chr5:11894584-11894703 [+]
Reference genome IRGSP-1.0
Source SRR1743000;SRR3123645;SRR1738226
Length 24
Mature sequence(if miRNA) 1 - AUAUUGUCCAGUGUCAAUUGUGAC - 24
Stem-loop(if miRNA) --      UCC              C  CCACAUAAUUUU  -A       G UCCAAAC
  AUAUUG   AGUGUCAAUUGUGA CA            GG  UGAGUGG A       A
  ||||||   |||||||||||||| ||            ||  ||||||| |       U
  UAUAAC   UCACAGUUAACACU GU            CC  ACUCACC U       G
AA      UUA              U  ACCUAUAUAACU  AA       G UAAAUAC
Stem-loop sequence AUAUUGUCCAGUGUCAAUUGUGACCACCACAUAAUUUUGGAUGAGUGGGAUCCAAACAUGCAUAAAUUGCCACUCAAACCUCAAUAUAUCCAUGUUCACAAUUGACACUAUUCAAUAUAA