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BaseInfo

ncRNA ID	novel_osa_miR1639
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:22543806-22543902 [-]
Reference genome	IRGSP-1.0
Source	SRR1743000
Length	24
Mature sequence(if miRNA)	1 - AGAUGACUCAUCUGUGACGGGCCC - 24
Stem-loop(if miRNA)	--               C     G          C  - ACUAAUGCCC   GCCCGUCACAGAUGA UCAUC GUGACGGGCU CA U          G   ||||||||||||||| ||||| |||||||||| || |   CGGGCAGUGUCUACU AGUAG CACUGCCCGG CU A          A CC               C     A          A  U CAGUAGAGUU
Stem-loop sequence	GCCCGUCACAGAUGACUCAUCGGUGACGGGCUCCAUACUAAUGCCCGAUUGAGAUGACAUUCAGGCCCGUCACAGAUGACUCAUCUGUGACGGGCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK107543.1	ncRNA:24   CCCGGGCAGUGUCUACUCAGUAGA   1   **|=||||||=*|||||||||||| targets:1570   UAGUCCGUCAUUGAUGAGUCAUCU   1593 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-129-H11, full insert sequence	NA	coding protein	psRNATarget
AK068923.1	ncRNA:24   CCCGGGCAGUGUCUACUCAGUAGA   1   *||||||||||||||||*|||||* targets:1220   AGGCCCGUCACAGAUGACUCAUCA   1243 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013170A09, full insert sequence	NA	coding protein	psRNATarget
XM_015763577.1	ncRNA:24   CCCGGGCAGUGUCUACUCAGUAGA   1   ***||||||||||||||||||||* targets:1454   UCACCCGUCACAGAUGAGUCAUCA   1477 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 (LOC107279605), mRNA	probably inactive leucine-rich repeat receptor-like protein kinase At2g25790(LOC107279605)	coding protein	psRNATarget
AK241950.1	ncRNA:24   CCCGGGCAGUGUCUACUCAGUAGA   1   ***||||||||||||||*|||||* targets:1029   AAACCCGUCACAGAUGACUCAUCA   1052 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J075091F02, full insert sequence	NA	coding protein	psRNATarget