Search result

BaseInfo

ncRNA ID	novel_osa_miR1622
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:24945957-24946018 [-]
Reference genome	IRGSP-1.0
Source	SRR1743000
Length	24
Mature sequence(if miRNA)	1 - UAAAUUUUGGUAAGUUUUGGCAUG - 24
Stem-loop(if miRNA)	--       U    G    U     A   UU   UGCUAAA UUUG UAAG UUUGG AUU  U   ||||||| |||| |||| ||||| |||   ACGGUUU GAAU GUUU AAAUC UAA  G GU       U    G    U     G   CU
Stem-loop sequence	UGCUAAAUUUUGGUAAGUUUUGGAAUUUUUGUCAAUGCUAAAUUUUGGUAAGUUUUGGCAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015764425.1	ncRNA:24   GUACGGUUUUGAAUGGUUUUAAAU   1   |||||||||||||||||||||||| targets:732   CAUGCCAAAACUUACCAAAAUUUA   755 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system (LOC4351341), transcript variant X2, mRNA	dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system(LOC4351341)	coding protein	psRNATarget
XM_015764426.1	ncRNA:24   GUACGGUUUUGAAUGGUUUUAAAU   1   |||||||||||||||||||||||| targets:727   CAUGCCAAAACUUACCAAAAUUUA   750 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system (LOC4351341), transcript variant X3, mRNA	dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system(LOC4351341)	coding protein	psRNATarget
XM_015786535.1	ncRNA:24   GUACGGUUUUGAAUGGUUUUAAAU   1   ||||=||||||||||||||||||= targets:1286   CAUGUCAAAACUUACCAAAAUUUG   1309 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group probable WRKY transcription factor 72 (LOC107278717), mRNA	probable WRKY transcription factor 72(LOC107278717)	coding protein	psRNATarget
AK108595.1	ncRNA:24   GUACGGUUUUGAAUGGUUUUAAAU   1   ||||||||||*||||||||||||= targets:774   CAUGCCAAAAGUUACCAAAAUUUG   797 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-146-D12, full insert sequence	NA	coding protein	psRNATarget
XM_015762370.1	ncRNA:24   GUACGGUUUUGAAUGGUUUUAAAU   1   |||*||||||||||=||||||||| targets:1375   CAUACCAAAACUUAUCAAAAUUUA   1398 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative serine/threonine-protein kinase-like protein CCR3 (LOC107279537), mRNA	putative serine/threonine-protein kinase-like protein CCR3(LOC107279537)	coding protein	psRNATarget
XM_015791299.1	ncRNA:24   GUACGGUUUUGAAUGGUUUUAAAU   1   ||||||||||*||||||||||||= targets:889   CAUGCCAAAAGUUACCAAAAUUUG   912 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325522 (LOC4325522), mRNA	uncharacterized LOC4325522(LOC4325522)	coding protein	psRNATarget
AK070444.1	ncRNA:24   GUACGGUUUUGAAUGGUUUUAAAU   1   *=*|||=|||*||||||||||||* targets:863   GGGGCCGAAAAUUACCAAAAUUUC   886 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023052K11, full insert sequence	NA	coding protein	psRNATarget