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BaseInfo

ncRNA ID	novel_osa_miR1613
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:35962520-35962743 [+]
Reference genome	IRGSP-1.0
Source	SRR1743000;SRR2040382;SRR2040383;SRR2040386;SRR2040387;SRR2040390;SRR2040402;SRR2040403;SRR2040410;SRR2040411
Length	24
Mature sequence(if miRNA)	201 - AAUCUAUGUUUAAUACUCUAAAUU - 224
Stem-loop(if miRNA)	--                  U C    UAC     CU   C      CUU   -             C  A C               CGC       - UG ---CAAU   AU   UUUAGAGUAUUAAACAUA A UAAU   AAAAC  AUU CAUAAG   AGA CUAAUUCGCGAGA GA U UUUUGAGUCUAAUUA   CAUGAUU U  A       GUG  G   |||||||||||||||||| | ||||   |||||  ||| ||||||   ||| ||||||||||||| || | |||||||||||||||   ||||||| |  |       |||   AAAUCUCAUAAUUUGUAU U AUUA   UUUUG  UAA GUAUUU   UCU GAUUAGGCGCUCU CU A AAAAUUCAGAUUAAU   GUAUUAA A  U       CAC  C UU                  C A    UUU     AU   A      -AU   C             U  A A               UAA       U GU UUCAAAU   AU
Stem-loop sequence	UUUAGAGUAUUAAACAUAUACUAAUUACAAAACCUAUUCCAUAAGCUUAGACUAAUUCGCGAGACGAAUCUUUUGAGUCUAAUUACGCCAUGAUUUUGACAAUGUGAUGCUACACUAAACUUUUGAUAAUUAUGAAUUAAUUAGACUUAAAAAAAUCUUCUCGCGGAUUAGCUCUUAUUUAUGAAAUUAGUUUUUUUAUUAAUCUAUGUUUAAUACUCUAAAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015781196.1	ncRNA:24   UUAAAUCUCAUAAUUUGUAUCUAA   1   ||||||||||||||||||||||*| targets:2009   AAUUUAGAGUAUUAAACAUAGACU   2032 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group GATA transcription factor 6 (LOC4336532), mRNA	GATA transcription factor 6(LOC4336532)	coding protein	psRNATarget
AK288948.1	ncRNA:24   UUAAAUCUCAUAAUUUGUAUCUAA   1   ||||||||||||||||||||||*| targets:2591   AAUUUAGAGUAUUAAACAUAGACU   2614 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090083I09, full insert sequence	NA	coding protein	psRNATarget
AK288241.1	ncRNA:24   UUAAAUCUCAUAAUUUGUAUCUAA   1   ||||||||||||||||||||||*| targets:529   AAUUUAGAGUAUUAAACAUAGACU   552 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090013L13, full insert sequence	NA	coding protein	psRNATarget
AK100185.1	ncRNA:24   UUAAAUCUCAUAAUUUGUAUCUAA   1   |||||=||||||||||||||*||| targets:667   AAUUUGGAGUAUUAAACAUACAUU   690 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023031M16, full insert sequence	NA	coding protein	psRNATarget
AK102033.1	ncRNA:24   UUAAAUCUCAUAAUUUGUAUCUAA   1   |||||=||||||||||||||||*| targets:287   AAUUUGGAGUAUUAAACAUAGACU   310 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033081B10, full insert sequence	NA	coding protein	psRNATarget
AK240978.1	ncRNA:24   UUAAAUCUCAUAAUUUGUAUCUAA   1   ||||-|||||=|||||||||||*| targets:353   AAUU-AGAGUGUUAAACAUAGACU   375 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065048J02, full insert sequence	NA	coding protein	psRNATarget