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BaseInfo

ncRNA ID novel_osa_miR1609
Species Oryza sativa
Class miRNA
Genome position Chr3:13492-13602 [+]
Reference genome IRGSP-1.0
Source SRR1743000
Length 20
Mature sequence(if miRNA) 92 - GAGAGAUUGAAAAGGCAGCC - 111
Stem-loop(if miRNA) CU     ---       G      -     --   CCU UUUGAUCCGCUUGGCACUCU
  CUGCU   UUAAUUU UCUCUC CUCUU  GCC   C                    C
  |||||   ||||||| |||||| |||||  |||   |
  GACGG   AGUUAGA AGAGAG GAGAG  AGA   G                    U
CC     AAA       G      A     CU   --- CUAAGAUGUCGUCGUCCUCC
Stem-loop sequence CUCUGCUUUAAUUUGUCUCUCCUCUUGCCCCUCUUUGAUCCGCUUGGCACUCUCUCCUCCUGCUGCUGUAGAAUCGAGAUCGAGAGAGAGAGAGAGAUUGAAAAGGCAGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
CT835707.1
ncRNA:20   CCGACGGAAAAGUUAGAGAG   1
  *|=|*||||||||||||||*
targets:285   UGUUUCCUUUUCAAUCUCUG   304

3.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN085G16, full insert sequence NA coding protein psRNATarget