ncRNA ID | novel_osa_miR1609 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr3:13492-13602 [+] |
Reference genome | IRGSP-1.0 |
Source | SRR1743000 |
Length | 20 |
Mature sequence(if miRNA) | 92 - GAGAGAUUGAAAAGGCAGCC - 111 |
Stem-loop(if miRNA) |
CU     ---       G      -     --   CCU UUUGAUCCGCUUGGCACUCU   CUGCU   UUAAUUU UCUCUC CUCUU  GCC   C                    C   |||||   ||||||| |||||| |||||  |||   |   GACGG   AGUUAGA AGAGAG GAGAG  AGA   G                    U CC     AAA       G      A     CU   --- CUAAGAUGUCGUCGUCCUCC |
Stem-loop sequence | CUCUGCUUUAAUUUGUCUCUCCUCUUGCCCCUCUUUGAUCCGCUUGGCACUCUCUCCUCCUGCUGCUGUAGAAUCGAGAUCGAGAGAGAGAGAGAGAUUGAAAAGGCAGCC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CT835707.1 |
|
3.0 | Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN085G16, full insert sequence | NA | coding protein | psRNATarget |