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BaseInfo

ncRNA ID	novel_osa_miR1606
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:14420470-14420590 [+]
Reference genome	IRGSP-1.0
Source	SRR1743000
Length	20
Mature sequence(if miRNA)	1 - UAAACAUGUAAGUCUAAAUU - 20
Stem-loop(if miRNA)	--          A  -       C    G   --------U UG      UCUGUAC   U  UAU   UAAACAUGUA GU CUAAAUU GAUC ACA         A  AAGAUA       UGG AC   U   |||||||||| || ||||||| |||| |||         |  ||||||       ||| ||   GUUUGUACGU CA GAUUUAA CUAG UGU         U  UUUUAU       AUC UG   U GU          -  U       A    A   UGUUCUCUU GU      UAUUUUA   -  UCA
Stem-loop sequence	UAAACAUGUAAGUCUAAAUUCGAUCGACAUAUGAAGAUAUCUGUACUGGUACUAUUUACUGUCUAAUUUUAUUAUUUUUGUUUCUCUUGUUGUAGAUCAAAUUUAGUACUGCAUGUUUGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288928.1	ncRNA:20   UUAAAUCUGAAUGUACAAAU   1   |||||||*|||||||||||= targets:4410   AAUUUAGCCUUACAUGUUUG   4429 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090082F16, full insert sequence	NA	coding protein	psRNATarget
LQ236054.1	ncRNA:20   UUAAAUCUGAAUGUACAAAU   1   ||||||*|||||=||||||| targets:145   AAUUUAAACUUAUAUGUUUA   164 Target Full Sequence	2.5	Sequence 2049 from Patent EP2985353	NA	coding protein	psRNATarget
JB164385.1	ncRNA:20   UUAAAUCUGAAUGUACAAAU   1   ||||||*|||||=||||||| targets:145   AAUUUAAACUUAUAUGUUUA   164 Target Full Sequence	2.5	Sequence 2049 from Patent EP2559767	NA	coding protein	psRNATarget
HI403924.1	ncRNA:20   UUAAAUCUGAAUGUACAAAU   1   ||||||*|||||=||||||| targets:145   AAUUUAAACUUAUAUGUUUA   164 Target Full Sequence	2.5	Sequence 2049 from Patent EP2074227	NA	coding protein	psRNATarget
AK288864.1	ncRNA:20   UUAAAUCUGAAUGUACAAAU   1   ||||||*|*||||||||||| targets:1117   AAUUUAAAGUUACAUGUUUA   1136 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090077O19, full insert sequence	NA	coding protein	psRNATarget
XM_015769419.1	ncRNA:20   UUAAAUCUGAAUGUACAAAU   1   *||||=*||||||||||||= targets:998   CAUUUGCACUUACAUGUUUG   1017 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4328243 (LOC4328243), mRNA	uncharacterized LOC4328243(LOC4328243)	coding protein	psRNATarget