Search result

BaseInfo

ncRNA ID	novel_osa_miR1596
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:5293484-5293592 [+]
Reference genome	IRGSP-1.0
Source	SRR1743000
Length	24
Mature sequence(if miRNA)	86 - ACGAGAUGUAGAAGUUGAAUUUGA - 109
Stem-loop(if miRNA)	--                 A  ACAACG             U    ----   AA  U   AAAUUUAACUUCUACAU UC      AAAAAAAUAAAUU GACU    UUG  UA A   ||||||||||||||||| ||      ||||||||||||| ||||    |||  || C   UUUAAGUUGAAGAUGUA AG      UUUUUUUGUUUAG UUGG    GAC  AU G AG                 G  ----CA             U    CGUC   CA  U
Stem-loop sequence	AAAUUUAACUUCUACAUAUCACAACGAAAAAAAUAAAUUUGACUUUGAAUAUACGUUAACCAGCUGCGGUUUGAUUUGUUUUUUUACGAGAUGUAGAAGUUGAAUUUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015792915.1	ncRNA:24   AGUUUAAGUUGAAGAUGUAGAGCA   1   |||||||=|||||||||||||||* targets:1886   UCAAAUUUAACUUCUACAUCUCGC   1909 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase 89B1 (LOC4345896), transcript variant X1, mRNA	UDP-glycosyltransferase 89B1(LOC4345896)	coding protein	psRNATarget
HI404353.1	ncRNA:24   AGUUUAAGUUGAAGAUGUAGAGCA   1   **||||||||||||||=||||||* targets:29   AAAAAUUCAACUUCUAUAUCUCGC   52 Target Full Sequence	2.5	Sequence 2478 from Patent EP2074227	NA	coding protein	psRNATarget
JB164814.1	ncRNA:24   AGUUUAAGUUGAAGAUGUAGAGCA   1   **||||||||||||||=||||||* targets:29   AAAAAUUCAACUUCUAUAUCUCGC   52 Target Full Sequence	2.5	Sequence 2478 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236483.1	ncRNA:24   AGUUUAAGUUGAAGAUGUAGAGCA   1   **||||||||||||||=||||||* targets:29   AAAAAUUCAACUUCUAUAUCUCGC   52 Target Full Sequence	2.5	Sequence 2478 from Patent EP2985353	NA	coding protein	psRNATarget
JB164690.1	ncRNA:24   AGUUUAAGUUGAAGAUGUAGAGCA   1   |*||||||||||||||||||||** targets:29   UGAAAUUCAACUUCUACAUCUCAC   52 Target Full Sequence	2.5	Sequence 2354 from Patent EP2559767	NA	coding protein	psRNATarget
HI404229.1	ncRNA:24   AGUUUAAGUUGAAGAUGUAGAGCA   1   |*||||||||||||||||||||** targets:29   UGAAAUUCAACUUCUACAUCUCAC   52 Target Full Sequence	2.5	Sequence 2354 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236359.1	ncRNA:24   AGUUUAAGUUGAAGAUGUAGAGCA   1   |*||||||||||||||||||||** targets:29   UGAAAUUCAACUUCUACAUCUCAC   52 Target Full Sequence	2.5	Sequence 2354 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015793191.1	ncRNA:24   AGUUUAAGUUGAAGAUGUAGAGCA   1   **||||||||=||*|||||||||| targets:451   AAAAAUUCAAUUUAUACAUCUCGU   474 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable receptor-like protein kinase At1g67000 (LOC4327950), transcript variant X1, mRNA	probable receptor-like protein kinase At1g67000(LOC4327950)	coding protein	psRNATarget
XM_015793197.1	ncRNA:24   AGUUUAAGUUGAAGAUGUAGAGCA   1   **||||||||=||*|||||||||| targets:453   AAAAAUUCAAUUUAUACAUCUCGU   476 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable receptor-like protein kinase At1g67000 (LOC4327950), transcript variant X2, mRNA	probable receptor-like protein kinase At1g67000(LOC4327950)	coding protein	psRNATarget