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BaseInfo

ncRNA ID	novel_osa_miR1594
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:27596271-27596471 [-]
Reference genome	IRGSP-1.0
Source	SRR1743000
Length	23
Mature sequence(if miRNA)	179 - AAACGUAGACUAAUGAUAAAACC - 201
Stem-loop(if miRNA)	--                      CU   UC    UACU GA       A   AAU    -CUA               C          C     GAUGC   AAACGUAGACUAAUGAUAAAAC  AUU  AUAA    G  CUAAUUC CGA   UAAU    UUGAGCCUAAUUAAU UAUGAUUAGC UAUGU     U   ||||||||||||||||||||||  |||  ||||    |  ||||||| |||   ||||    ||||||||||||||| |||||||||| |||||     A   UUUGUAUCUGAUUAUUAUUUUG  UAA  UAUU    C  GAUUAAG GUU   AUUA    AAUUCGGAUUAAUUA GUAUUAAUCG GUACA     U AA                      AU   CA    UACU UC       C   -CU    AAAA               A          U     AAUAA
Stem-loop sequence	AAACGUAGACUAAUGAUAAAACCUAUUUCAUAAUACUGGACUAAUUCACGAAAUUAAUCUAUUGAGCCUAAUUAAUCUAUGAUUAGCCUAUGUGAUGCUAUAAUAAACAUGUGCUAAUUAUGAAUUAAUUAGGCUUAAAAAAAUUAUCUUGCGAAUUAGCUCUCAUUUAUACAAUUAGUUUUAUUAUUAGUCUAUGUUUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK067578.1	ncRNA:23   CCAAAAUAGUAAUCAGAUGCAAA   1   *|||||||=|||||||||||||| targets:1803   UGUUUUAUUAUUAGUCUACGUUU   1825 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013110M15, full insert sequence	NA	coding protein	psRNATarget
AK288236.1	ncRNA:23   CCAAAAUAGUAAUCAGAUGCAAA   1   *|||||=|||||||||||||||| targets:1886   UGUUUUGUCAUUAGUCUACGUUU   1908 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090013E07, full insert sequence	NA	coding protein	psRNATarget
AK119753.1	ncRNA:23   CCAAAAUAGUAAUCAGAUGCAAA   1   *|||||=|=|||||||||||||| targets:2060   UGUUUUGUUAUUAGUCUACGUUU   2082 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-167-E02, full insert sequence	NA	coding protein	psRNATarget
XM_015767213.1	ncRNA:23   CCAAAAUAGUAAUCAGAUGCAAA   1   ||||||||=|*|||||||||||| targets:1987   GGUUUUAUUAAUAGUCUACGUUU   2009 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group beclin-1-like protein (LOC4324394), transcript variant X1, mRNA	beclin-1-like protein(LOC4324394)	coding protein	psRNATarget
XM_015767222.1	ncRNA:23   CCAAAAUAGUAAUCAGAUGCAAA   1   ||||||||=|*|||||||||||| targets:1969   GGUUUUAUUAAUAGUCUACGUUU   1991 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group beclin-1-like protein (LOC4324394), transcript variant X2, mRNA	beclin-1-like protein(LOC4324394)	coding protein	psRNATarget
AK101033.1	ncRNA:23   CCAAAAUAGUAAUCAGAUGCAAA   1   ||||||||=|*|||||||||||| targets:1970   GGUUUUAUUAAUAGUCUACGUUU   1992 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023150N19, full insert sequence	NA	coding protein	psRNATarget
XM_015794883.1	ncRNA:23   CCAAAAUAGUAAUCAGAUGCAAA   1   ||||||||=|*|||||||||||| targets:138   GGUUUUAUUAAUAGUCUACGUUU   160 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107282066 (LOC107282066), mRNA	uncharacterized LOC107282066(LOC107282066)	coding protein	psRNATarget
CT833304.1	ncRNA:23   CCAAAAUAGUAAUCAGAUGCAAA   1   ||||||||=|*|||||||||||| targets:1369   GGUUUUAUUAAUAGUCUACGUUU   1391 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN010D02, full insert sequence	NA	coding protein	psRNATarget
XM_015764825.1	ncRNA:23   CCAAAAUAGUAAUCAGAUGCAAA   1   **||||=|=|||||||||||||| targets:106   UAUUUUGUUAUUAGUCUACGUUU   128 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group pre-mRNA-splicing factor CWC22 homolog (LOC4351904), mRNA	pre-mRNA-splicing factor CWC22 homolog(LOC4351904)	coding protein	psRNATarget
AM778048.1	ncRNA:23   CCAAAAUAGUAAUCAGAUGCAAA   1   **||||=|=|||||||||||||| targets:106   UAUUUUGUUAUUAGUCUACGUUU   128 Target Full Sequence	2.0	Oryza sativa Japonica Group mRNA for putative pre-mRNA-splicing factor cwc-22 (Os12g15420 gene), cultivar Azucena	NA	coding protein	psRNATarget
AK288873.1	ncRNA:23   CCAAAAUAGUAAUCAGAUGCAAA   1   *|||||||=|*|||||||||||| targets:5663   UGUUUUAUUAAUAGUCUACGUUU   5685 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090078I24, full insert sequence	NA	coding protein	psRNATarget
AK064922.1	ncRNA:23   CCAAAAUAGUAAUCAGAUGCAAA   1   *|||||||=|||||*|||||||| targets:2079   UGUUUUAUUAUUAGACUACGUUU   2101 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013000N12, full insert sequence	NA	coding protein	psRNATarget
AK099913.1	ncRNA:23   CCAAAAUAGUAAUCAGAUGCAAA   1   *|||||||=|||||*|||||||| targets:836   UGUUUUAUUAUUAGACUACGUUU   858 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013116E13, full insert sequence	NA	coding protein	psRNATarget