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BaseInfo

ncRNA ID	novel_osa_miR1589
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:9789434-9789568 [+]
Reference genome	IRGSP-1.0
Source	SRR1743000;SRR1743002;SRR1743006;SRR1849765;SRR1849771;SRR1849774;SRR2040385;SRR2040387;SRR2040388;SRR2040389;SRR2040390;SRR2040403;SRR2040404;SRR2040405;SRR2040408;SRR2040409;SRR2040410;SRR2040411;SRR2857734;SRR2857735;SRR1738227;SRR1738237;SRR1738241
Length	24
Mature sequence(if miRNA)	112 - AACAUCAACCGGGACUAAAGAUCU - 135
Stem-loop(if miRNA)	--                U                       UCAUCUUUAG      UUCGAAUG   U      AUCUUUAGUCCCGGUU GUGUUACCAACCGGGACUAAAGA          UCCCGG        CUG CAGG   |||||||||||||||| |||||||||||||||||||||||          ||||||        ||| |||A   UAGAAAUCAGGGCCAA UACAAUGGUUGGCCCUGAUUUCU          AGGGCC        GAC GUCC UC                C                       ----------      --CCCCCG   U
Stem-loop sequence	AUCUUUAGUCCCGGUUUGUGUUACCAACCGGGACUAAAGAUCAUCUUUAGUCCCGGUUCGAAUGCUGUCAGGACCUGUCAGGCCCCCCCGGGAUCUUUAGUCCCGGUUGGUAACAUCAACCGGGACUAAAGAUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015755226.1	ncRNA:24   UCUAGAAAUCAGGGCCAACUACAA   1   =||||||||||||||||||||||| targets:69   GGAUCUUUAGUCCCGGUUGAUGUU   92 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278786 (LOC107278786), mRNA	uncharacterized LOC107278786(LOC107278786)	coding protein	psRNATarget
AK289098.1	ncRNA:24   UCUAGAAAUCAGGGCCAACUACAA   1   |||||||||||||||||||=|||| targets:146   AGAUCUUUAGUCCCGGUUGGUGUU   169 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK289098.1	ncRNA:24   UCUAGAAAUCAGGGCCAACUACAA   1   *|||||||**|||||||||||||| targets:194   CGAUCUUUUUUCCCGGUUGAUGUU   217 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK288377.1	ncRNA:24   UCUAGAAAUCAGGGCCAACUACAA   1   *||||||||||||||||||=|||| targets:1375   CGAUCUUUAGUCCCGGUUGGUGUU   1398 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090026K06, full insert sequence	NA	coding protein	psRNATarget
AK288796.1	ncRNA:24   UCUAGAAAUCAGGGCCAACUACAA   1   *||||||||||||||||||=|||| targets:1829   CGAUCUUUAGUCCCGGUUGGUGUU   1852 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
AK288544.1	ncRNA:24   UCUAGAAAUCAGGGCCAACUACAA   1   ||||||||||||||||||||||** targets:1788   AGAUCUUUAGUCCCGGUUGAUGAG   1811 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090046G24, full insert sequence	NA	coding protein	psRNATarget
AK288463.1	ncRNA:24   UCUAGAAAUCAGGGCCAACUACAA   1   =||||||||||||||||||=|||* targets:554   GGAUCUUUAGUCCCGGUUGGUGUC   577 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
AK121178.1	ncRNA:24   UCUA--GAAAUCAGGGCCAACUACAA   1   ||||--=||||||||||||*|||||| targets:1973   AGAUAUUUUUAGUCCCGGUCGAUGUU   1998 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023083G22, full insert sequence	NA	coding protein	psRNATarget
AK119916.1	ncRNA:24   UCUAGAAAUCAGGGCCAACUACAA   1   |*|*||||||||=||||||||||| targets:363   ACAACUUUAGUCUCGGUUGAUGUU   386 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-183-F10, full insert sequence	NA	coding protein	psRNATarget