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BaseInfo

ncRNA ID novel_osa_miR1586
Species Oryza sativa
Class miRNA
Genome position Chr2:7394383-7394488 [+]
Reference genome IRGSP-1.0
Source SRR1743000;SRR3123645;SRR1738226
Length 24
Mature sequence(if miRNA) 83 - AAUAUAGAAAAUGCUAGAAUGACU - 106
Stem-loop(if miRNA) --               UC C   C           A          ACAUAU
  UCAUUCUAGCAUUUU  A AUU AUAUUGAUGUU AUGAAUCUAG      A
  |||||||||||||||  | ||| ||||||||||| ||||||||||
  AGUAAGAUCGUAAAA  U UAA UAUAACUACAA UACUUAGAUC      U
UC               GA A   A           A          CAUCUA
Stem-loop sequence UCAUUCUAGCAUUUUUCACAUUCAUAUUGAUGUUAAUGAAUCUAGACAUAUAUAUCUACCUAGAUUCAUAAACAUCAAUAUAAAUAUAGAAAAUGCUAGAAUGACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015763560.1
ncRNA:24   UCAGUAAGAUCGUAAAAGAUAUAA   1
  |||||||||||||||||=||||||
targets:984   AGUCAUUCUAGCAUUUUUUAUAUU   1007

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278415 (LOC107278415), mRNA uncharacterized LOC107278415(LOC107278415) coding protein psRNATarget
XM_015756761.1
ncRNA:24   UCAGUAAGAUCGUAAAAGAUAUAA   1
  ||||||||||||||||||*|||||
targets:3351   AGUCAUUCUAGCAUUUUCCAUAUU   3374

1.5 PREDICTED: Oryza sativa Japonica Group G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 (LOC4347249), mRNA G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370(LOC4347249) coding protein psRNATarget
AK072906.1
ncRNA:24   UCAGUAAGAUCGUAAAAGAUAUAA   1
  ||||||||||||||||||||*|||
targets:2721   AGUCAUUCUAGCAUUUUCUACAUU   2744

1.5 Oryza sativa Japonica Group cDNA clone:J023147K18, full insert sequence NA coding protein psRNATarget
XM_015777143.1
ncRNA:24   UCAGUAAGAUCGUAAAAGAUAUAA   1
  ||||||||||*|||||||||||||
targets:1905   AGUCAUUCUAUCAUUUUCUAUAUU   1928

1.0 PREDICTED: Oryza sativa Japonica Group lecithin-cholesterol acyltransferase-like 1 (LOC4333995), mRNA lecithin-cholesterol acyltransferase-like 1(LOC4333995) coding protein psRNATarget
AK071679.1
ncRNA:24   UCAGUAAGAUCGUAAAAGAUAUAA   1
  ||||||||||*|||||||||||||
targets:1789   AGUCAUUCUAUCAUUUUCUAUAUU   1812

1.0 Oryza sativa Japonica Group cDNA clone:J023108I08, full insert sequence NA coding protein psRNATarget
AK110888.1
ncRNA:24   UCAGUAAGAUCGUAAAAGAUAUAA   1
  ||||||||||||||||||||*|||
targets:1201   AGUCAUUCUAGCAUUUUCUAGAUU   1224

1.5 Oryza sativa Japonica Group cDNA clone:002-172-H04, full insert sequence NA coding protein psRNATarget
AK242359.1
ncRNA:24   UCAGUAAGAUCGUAAAAGAUAUAA   1
  |||=|||=|||||||||=||||||
targets:335   AGUUAUUUUAGCAUUUUUUAUAUU   358

2.5 Oryza sativa Japonica Group cDNA, clone: J080025D13, full insert sequence NA coding protein psRNATarget
AK241705.1
ncRNA:24   UCAGUAAGAUCGUAAAAGAUAUAA   1
  |||||||=||||||||*|||||||
targets:3980   AGUCAUUUUAGCAUUUCCUAUAUU   4003

2.5 Oryza sativa Japonica Group cDNA, clone: J065196L09, full insert sequence NA coding protein psRNATarget
XM_015779859.1
ncRNA:24   UCAGUAAGAUCGUAAAAGAUAUAA   1
  |||||||=||||||||||*|||||
targets:926   AGUCAUUUUAGCAUUUUCCAUAUU   949

2.5 PREDICTED: Oryza sativa Japonica Group formin-like protein 3 (LOC4335722), mRNA formin-like protein 3(LOC4335722) coding protein psRNATarget
XM_015763160.1
ncRNA:24   UCAGUAAGAUCGUAAAAGAUAUAA   1
  *||=|||||||||||||||||||*
targets:1108   UGUUAUUCUAGCAUUUUCUAUAUC   1131

1.0 PREDICTED: Oryza sativa Japonica Group acidic endochitinase (LOC4325066), mRNA acidic endochitinase(LOC4325066) coding protein psRNATarget
AK111415.1
ncRNA:24   UCAGUAAGAUCGUAAAAGAUAUAA   1
  *||=|||||||||||||||||||*
targets:1103   UGUUAUUCUAGCAUUUUCUAUAUC   1126

1.0 Oryza sativa Japonica Group cDNA clone:002-182-G02, full insert sequence NA coding protein psRNATarget
XM_015788194.1
ncRNA:24   UCAGUAAGAUCGUAAAAGAUAUAA   1
  ||||||||||*|||||*|||||||
targets:1758   AGUCAUUCUACCAUUUCCUAUAUU   1781

2.5 PREDICTED: Oryza sativa Japonica Group embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein (LOC4341015), transcript variant X1, mRNA embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein(LOC4341015) coding protein psRNATarget
XM_015788196.1
ncRNA:24   UCAGUAAGAUCGUAAAAGAUAUAA   1
  ||||||||||*|||||*|||||||
targets:1739   AGUCAUUCUACCAUUUCCUAUAUU   1762

2.5 PREDICTED: Oryza sativa Japonica Group embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein (LOC4341015), transcript variant X3, mRNA embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein(LOC4341015) coding protein psRNATarget
XM_015788195.1
ncRNA:24   UCAGUAAGAUCGUAAAAGAUAUAA   1
  ||||||||||*|||||*|||||||
targets:1728   AGUCAUUCUACCAUUUCCUAUAUU   1751

2.5 PREDICTED: Oryza sativa Japonica Group embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein (LOC4341015), transcript variant X2, mRNA embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein(LOC4341015) coding protein psRNATarget
XM_015775040.1
ncRNA:24   UCAGUAAGAUCGUAAAAGAUAUAA   1
  ||||||||||*|||||||||*|||
targets:1207   AGUCAUUCUAACAUUUUCUACAUU   1230

2.5 PREDICTED: Oryza sativa Japonica Group senescence-specific cysteine protease SAG39-like (LOC107280424), mRNA senescence-specific cysteine protease SAG39-like(LOC107280424) coding protein psRNATarget
AK067363.1
ncRNA:24   UCAGUAAGAUCGUAAAAGAUAUAA   1
  ||*|*||=|||||||*||||||||
targets:964   AGACUUUUUAGCAUUGUCUAUAUU   987

2.5 Oryza sativa Japonica Group cDNA clone:J013100G02, full insert sequence NA coding protein psRNATarget
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