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BaseInfo

ncRNA ID	novel_osa_miR1580
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:35048937-35049008 [+]
Reference genome	IRGSP-1.0
Source	SRR1743000
Length	24
Mature sequence(if miRNA)	49 - GCCACGUGGGUGAUCGCGGCUGCC - 72
Stem-loop(if miRNA)	--U    A -       U  -    C       C CC    GGCC C AUCACCC CG GGCC GACCCCC C  C    |||| | ||||||| || |||| ||||||| |    UCGG G UAGUGGG GC CCGG CUGGGGG G  C CCG    C C       U  A    A       A CC
Stem-loop sequence	UGGCCACAUCACCCUCGGGCCCGACCCCCCCCCCCCCGAGGGGGUCAGGCCACGUGGGUGAUCGCGGCUGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK287913.1	ncRNA:24   CCGUCGGCGCUAGUGGGUGCACCG   1   ||=|||||||=||||||||||||| targets:696   GGUAGCCGCGGUCACCCACGUGGC   719 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J065213K16, full insert sequence	NA	coding protein	psRNATarget
AK070969.1	ncRNA:24   CCGUCGGCGCUAGUGGGUGCACCG   1   |||||||||*=||||||||||||| targets:1325   GGCAGCCGCUGUCACCCACGUGGC   1348 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023070P10, full insert sequence	NA	coding protein	psRNATarget
AK060991.1	ncRNA:24   CCGUCGGCGCUAGUGGGUGCACCG   1   ||||||=||*=||||||||||||| targets:222   GGCAGCUGCAGUCACCCACGUGGC   245 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:006-203-D03, full insert sequence	NA	coding protein	psRNATarget
AK120421.1	ncRNA:24   CCGUCGGCGCUAGUGGGUGCACCG   1   |||||*|*|||||||||||||||| targets:2932   GGCAGACACGAUCACCCACGUGGC   2955 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013094P18, full insert sequence	NA	coding protein	psRNATarget
AK071769.1	ncRNA:24   CCGUCGGCGCUAGUGGGUGCACCG   1   |||||*|*|||||||||||||||| targets:80   GGCAGACACGAUCACCCACGUGGC   103 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023113O03, full insert sequence	NA	coding protein	psRNATarget
AK288355.1	ncRNA:24   CCGUCGGCGCUAGUGGGUGCACCG   1   |||||*|*|*|||||||||||||| targets:400   GGCAGACACAAUCACCCACGUGGC   423 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090024I05, full insert sequence	NA	coding protein	psRNATarget
XM_015758984.1	ncRNA:24   CCGUCGGCGCUAGUGGGUGCACCG   1   |||||**||*|||||||||||||| targets:1776   GGCAGGAGCAAUCACCCACGUGGC   1799 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107279220 (LOC107279220), mRNA	uncharacterized LOC107279220(LOC107279220)	coding protein	psRNATarget
AK073682.1	ncRNA:24   CCGU-CGGCGCUAGUGGGUGCACCG   1   *|||-|||**||||||||||||||= targets:1356   CGCAUGCCAGGAUCACCCACGUGGU   1380 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J033057K05, full insert sequence	NA	coding protein	psRNATarget
AK111472.1	ncRNA:24   CCGU-CGGCGCUAGUGGGUGCACCG   1   *|||-|||**||||||||||||||= targets:1314   CGCAUGCCAGGAUCACCCACGUGGU   1338 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-183-F02, full insert sequence	NA	coding protein	psRNATarget