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BaseInfo

ncRNA ID	novel_osa_miR1579
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:34871750-34871938 [+]
Reference genome	IRGSP-1.0
Source	SRR1743000
Length	24
Mature sequence(if miRNA)	166 - AAGAAGUUUGACUAGGAAAAAAGU - 189
Stem-loop(if miRNA)	---                   A   A                      ---UUU   CAUCUAA    UG    --UA  U        U   AUAU    UUUUUUUUAGUCAAACUUU UUA GUUUGACUAAGUUUAUAGAAAA      UAG       AAUA  AAAU    GU UUAUUAAA CUA    U    ||||||||||||||||||| ||| ||||||||||||||||||||||      |||       ||||  ||||    || |||||||| |||    AAAAAGGAUCAGUUUGAAG AAU CAAACUGAUUUAAAUAUCUUUU      AUC       UUAU  UUUG    UA AAUAGUUU GAU    G UGA                   A   C                      UAUAUU   AUAAAAG    GU    UUUG  U        -   AUAA
Stem-loop sequence	UUUUUUUUAGUCAAACUUUAUUAAGUUUGACUAAGUUUAUAGAAAAUUUUAGCAUCUAAAAUAUGAAAUUAGUUUUAUUAAAUCUAAUAUUGAAUAUAGUUUGAUAAUAUGUUUGUUUUGUAUUGAAAAUACUAUUAUAUUUUUCUAUAAAUUUAGUCAAACCUAAAGAAGUUUGACUAGGAAAAAAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288971.1	ncRNA:24   UGAAAAAAGGAUCAGUUUGAAGAA   1   |=|||||||=|||||||||||||| targets:1195   AUUUUUUUCUUAGUCAAACUUCUU   1218 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090085E12, full insert sequence	NA	coding protein	psRNATarget
AK288412.1	ncRNA:24   UGAAAAAAGGAUCAGUUUGAAGAA   1   |||||||||||||||||||||*|| targets:2333   ACUUUUUUCCUAGUCAAACUUAUU   2356 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090030N09, full insert sequence	NA	coding protein	psRNATarget
AK073029.1	ncRNA:24   UGAAAAAAGGAUCAGUUUGAAGAA   1   ||||||||||||*||||||||||| targets:1588   ACUUUUUUCCUAAUCAAACUUCUU   1611 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023146M03, full insert sequence	NA	coding protein	psRNATarget
AK120213.1	ncRNA:24   UGAAAAAAGGAUCAGUUUGAAGAA   1   |||||||||=||||||||||||*| targets:1058   ACUUUUUUCUUAGUCAAACUUCCU   1081 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013039G14, full insert sequence	NA	coding protein	psRNATarget
CT827894.1	ncRNA:24   UGAAAAAAGGAUCAGUUUGAAGAA   1   |=||||||=||||||||||||*|| targets:1099   AUUUUUUUUCUAGUCAAACUUAUU   1122 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128L19, full insert sequence	NA	coding protein	psRNATarget
AK066963.1	ncRNA:24   UGAAAAAAGGAUCAGUUUGAAGAA   1   *=||||||=||*|||||||||||| targets:2054   UUUUUUUUUCUUGUCAAACUUCUU   2077 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013093P21, full insert sequence	NA	coding protein	psRNATarget
XM_015761249.1	ncRNA:24   UGAAAAAAGGAUCAGUUUGAAGAA   1   *=||||||=||*|||||||||||| targets:2053   UUUUUUUUUCUUGUCAAACUUCUU   2076 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group laccase-20 (LOC4351006), mRNA	laccase-20(LOC4351006)	coding protein	psRNATarget