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BaseInfo

ncRNA ID	novel_osa_miR1578
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:32560364-32560553 [+]
Reference genome	IRGSP-1.0
Source	SRR1743000
Length	24
Mature sequence(if miRNA)	167 - AAGAAGUUUGACUAGGAAAAAAGU - 190
Stem-loop(if miRNA)	--                        -          A          AAUAUCA       CC      -AAAACAAACA     UCAA      UUC   UUUUUUCCUAGUCAAACUUUUUUA GUUUGACUAA UUUGUAGAAA       UAACAUU  CAAUAC           UAUUA    AAUAUA   A   |||||||||||||||||||||||| |||||||||| ||||||||||       |||||||  ||||||           |||||    ||||||   AAAAAAGGAUCAGUUUGAAGAAAU CAAACUGAUU AAAUAUUUUU       GUUGUAG  GUUGUG           GUAAU    UUAUAU   A UG                        A          C          --AAAUC       AU      GUUUAAUCAAG     ----      UGU
Stem-loop sequence	UUUUUUCCUAGUCAAACUUUUUUAGUUUGACUAAAUUUGUAGAAAAAUAUCAUAACAUUCCCAAUACAAAACAAACAUAUUAUCAAAAUAUAUUCAAUGUUAUAUUUAAUGGAACUAAUUUGGUGUUGUAGAUGUUGCUAAAUUUUUAUAAACUUAGUCAAACAUAAAGAAGUUUGACUAGGAAAAAAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288971.1	ncRNA:24   UGAAAAAAGGAUCAGUUUGAAGAA   1   |=|||||||=|||||||||||||| targets:1195   AUUUUUUUCUUAGUCAAACUUCUU   1218 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090085E12, full insert sequence	NA	coding protein	psRNATarget
AK288412.1	ncRNA:24   UGAAAAAAGGAUCAGUUUGAAGAA   1   |||||||||||||||||||||*|| targets:2333   ACUUUUUUCCUAGUCAAACUUAUU   2356 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090030N09, full insert sequence	NA	coding protein	psRNATarget
AK073029.1	ncRNA:24   UGAAAAAAGGAUCAGUUUGAAGAA   1   ||||||||||||*||||||||||| targets:1588   ACUUUUUUCCUAAUCAAACUUCUU   1611 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023146M03, full insert sequence	NA	coding protein	psRNATarget
AK120213.1	ncRNA:24   UGAAAAAAGGAUCAGUUUGAAGAA   1   |||||||||=||||||||||||*| targets:1058   ACUUUUUUCUUAGUCAAACUUCCU   1081 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013039G14, full insert sequence	NA	coding protein	psRNATarget
CT827894.1	ncRNA:24   UGAAAAAAGGAUCAGUUUGAAGAA   1   |=||||||=||||||||||||*|| targets:1099   AUUUUUUUUCUAGUCAAACUUAUU   1122 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128L19, full insert sequence	NA	coding protein	psRNATarget
AK066963.1	ncRNA:24   UGAAAAAAGGAUCAGUUUGAAGAA   1   *=||||||=||*|||||||||||| targets:2054   UUUUUUUUUCUUGUCAAACUUCUU   2077 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013093P21, full insert sequence	NA	coding protein	psRNATarget
XM_015761249.1	ncRNA:24   UGAAAAAAGGAUCAGUUUGAAGAA   1   *=||||||=||*|||||||||||| targets:2053   UUUUUUUUUCUUGUCAAACUUCUU   2076 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group laccase-20 (LOC4351006), mRNA	laccase-20(LOC4351006)	coding protein	psRNATarget