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BaseInfo

ncRNA ID novel_osa_miR1577
Species Oryza sativa
Class miRNA
Genome position Chr1:30636627-30636697 [+]
Reference genome IRGSP-1.0
Source SRR1743000;SRR2857728;SRR3123646;SRR3123651;SRR1738228;SRR1738240
Length 24
Mature sequence(if miRNA) 48 - AUAUUUCGACUGUAACUGCACUGU - 71
Stem-loop(if miRNA) --   -          -        ACAGAAA    A
  AGU CAGUUACAGU GAGGUAUA       UUAC A
  ||| |||||||||| ||||||||       ||||
  UCA GUCAAUGUCA CUUUAUAU       AAUG C
UG   C          G        -GGAGUG    U
Stem-loop sequence AGUCAGUUACAGUGAGGUAUAACAGAAAUUACAACUGUAAGUGAGGUAUAUUUCGACUGUAACUGCACUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK100562.1
ncRNA:24   UGUCACGUCAAUGUCAGCUUUAUA   1
  *=||*|||||||||||||||||**
targets:3036   UUAGAGCAGUUACAGUCGAAAUUA   3059

2.5 Oryza sativa Japonica Group cDNA clone:J023104G23, full insert sequence NA coding protein psRNATarget