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BaseInfo

ncRNA ID novel_osa_miR1576
Species Oryza sativa
Class miRNA
Genome position Chr1:37373259-37373422 [-]
Reference genome IRGSP-1.0
Source SRR1555746;SRR1556014;SRR4407953;SRR4407954;SRR4407956;SRR4407957
Length 24
Mature sequence(if miRNA) 141 - UCGCGCCCAACUUUGAUCGUCCGU - 164
Stem-loop(if miRNA) --       C  C          CG          AUUUUUUAUA      AU UUUGUUGUUAUGUGAUGAUAAAAUAUGAAUAG
  UCGCGCC AA UUUGAUCGUC  UCUUAUUUGA          AUUAGU  U                                U
  ||||||| || ||||||||||  ||||||||||          ||||||  |
  AGCGUGG UU AAACUGGCAG  AGAAUAAACU          AAAAAU  U                                A
AA       A  A          AU          ------GUUA      -- UUUUGUUAAUUUUUGUAAUCAGUGCUCAUUUC
Stem-loop sequence UCGCGCCCAACUUUGAUCGUCCGUCUUAUUUGAAUUUUUUAUAAUUAGUAUUUUUGUUGUUAUGUGAUGAUAAAAUAUGAAUAGUACUUUACUCGUGACUAAUGUUUUUAAUUGUUUUUUAAAAAAUUGUCAAAUAAGAUAGACGGUCAAAAUUAGGUGCGAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK289157.1
ncRNA:24   UGCCUGCUAGUUUCAACCCGCGCU   1
  ||||||||||||||||*||||||=
targets:151   ACGGACGAUCAAAGUUCGGCGCGG   174

2.5 Oryza sativa Japonica Group cDNA, clone: J090099P09, full insert sequence NA coding protein psRNATarget
AK070816.1
ncRNA:24   UGCCUGCUAGUUUCAACCCGCGCU   1
  |||||=||||||||||||||*|||
targets:1686   ACGGAUGAUCAAAGUUGGGCACGA   1709

2.5 Oryza sativa Japonica Group cDNA clone:J023066M01, full insert sequence NA coding protein psRNATarget
AK288298.1
ncRNA:24   UGCCUGCUAGUUUCAACCCGCGCU   1
  |||||||||||||||||*|||||=
targets:1308   ACGGACGAUCAAAGUUGAGCGCGG   1331

2.5 Oryza sativa Japonica Group cDNA, clone: J090019N21, full insert sequence NA coding protein psRNATarget
AK072510.1
ncRNA:24   UGCCUGCUAGUUUCAACCCGCGCU   1
  |||||||||=|||||||*||||||
targets:2781   ACGGACGAUUAAAGUUGAGCGCGA   2804

2.5 Oryza sativa Japonica Group cDNA clone:J023130E20, full insert sequence NA coding protein psRNATarget
LQ236551.1
ncRNA:24   UGCCUGCUAGUUUCAACCCGCGCU   1
  ||||||||||||||||||||*||=
targets:167   ACGGACGAUCAAAGUUGGGCACGG   190

2.5 Sequence 2546 from Patent EP2985353 NA coding protein psRNATarget
JB164882.1
ncRNA:24   UGCCUGCUAGUUUCAACCCGCGCU   1
  ||||||||||||||||||||*||=
targets:167   ACGGACGAUCAAAGUUGGGCACGG   190

2.5 Sequence 2546 from Patent EP2559767 NA coding protein psRNATarget
HI404421.1
ncRNA:24   UGCCUGCUAGUUUCAACCCGCGCU   1
  ||||||||||||||||||||*||=
targets:167   ACGGACGAUCAAAGUUGGGCACGG   190

2.5 Sequence 2546 from Patent EP2074227 NA coding protein psRNATarget
HI403802.1
ncRNA:24   UGCCUGCUAGUUUCAACCCGCGCU   1
  |||||||||||||*|||||||||=
targets:145   ACGGACGAUCAAAUUUGGGCGCGG   168

2.5 Sequence 1927 from Patent EP2074227 NA coding protein psRNATarget
LQ235932.1
ncRNA:24   UGCCUGCUAGUUUCAACCCGCGCU   1
  |||||||||||||*|||||||||=
targets:145   ACGGACGAUCAAAUUUGGGCGCGG   168

2.5 Sequence 1927 from Patent EP2985353 NA coding protein psRNATarget
JB164263.1
ncRNA:24   UGCCUGCUAGUUUCAACCCGCGCU   1
  |||||||||||||*|||||||||=
targets:145   ACGGACGAUCAAAUUUGGGCGCGG   168

2.5 Sequence 1927 from Patent EP2559767 NA coding protein psRNATarget
XM_015780430.1
ncRNA:24   UGCCUGCUAGUUUCAACCCGCGCU   1
  ||||||*=|||||||||||||||=
targets:546   ACGGACAGUCAAAGUUGGGCGCGG   569

3.0 PREDICTED: Oryza sativa Japonica Group E3 ubiquitin ligase BIG BROTHER-related-like (LOC107276627), transcript variant X1, mRNA E3 ubiquitin ligase BIG BROTHER-related-like(LOC107276627) coding protein psRNATarget
XM_015780431.1
ncRNA:24   UGCCUGCUAGUUUCAACCCGCGCU   1
  ||||||*=|||||||||||||||=
targets:546   ACGGACAGUCAAAGUUGGGCGCGG   569

3.0 PREDICTED: Oryza sativa Japonica Group E3 ubiquitin ligase BIG BROTHER-related-like (LOC107276627), transcript variant X2, mRNA E3 ubiquitin ligase BIG BROTHER-related-like(LOC107276627) coding protein psRNATarget
AK288230.1
ncRNA:24   UGCCUGCUAGUUUCAACCCGCGCU   1
  |||*|=|=|||||||||||||||=
targets:5639   ACGAAUGGUCAAAGUUGGGCGCGG   5662

3.0 Oryza sativa Japonica Group cDNA, clone: J090012M14, full insert sequence NA coding protein psRNATarget
XM_015763075.1
ncRNA:24   UGCCUGCUAGUUUCAACCCGCGCU   1
  |||*|=|=|||||||||||||||=
targets:2405   ACGAAUGGUCAAAGUUGGGCGCGG   2428

3.0 PREDICTED: Oryza sativa Japonica Group protein trichome birefringence-like 28 (LOC4327430), transcript variant X3, mRNA protein trichome birefringence-like 28(LOC4327430) coding protein psRNATarget
XM_015772368.1
ncRNA:24   UGCCUGCUAGUUUCAACCCGCGCU   1
  |||*|||||||||*|||||||||=
targets:1245   ACGAACGAUCAAAAUUGGGCGCGG   1268

2.5 PREDICTED: Oryza sativa Japonica Group GPN-loop GTPase 3 (LOC4333905), mRNA GPN-loop GTPase 3(LOC4333905) coding protein psRNATarget
AK242594.1
ncRNA:24   UGCCUGCUAGUUUCAACCCGCGCU   1
  |||*|||||||||*|||||||||=
targets:1232   ACGAACGAUCAAAAUUGGGCGCGG   1255

2.5 Oryza sativa Japonica Group cDNA, clone: J090012I09, full insert sequence NA coding protein psRNATarget
JB164289.1
ncRNA:24   UGCCUGCUAGUUUCAACCCGCGCU   1
  |||*|=||||||||||*|||||||
targets:149   ACGAAUGAUCAAAGUUAGGCGCGA   172

2.5 Sequence 1953 from Patent EP2559767 NA coding protein psRNATarget
LQ235958.1
ncRNA:24   UGCCUGCUAGUUUCAACCCGCGCU   1
  |||*|=||||||||||*|||||||
targets:149   ACGAAUGAUCAAAGUUAGGCGCGA   172

2.5 Sequence 1953 from Patent EP2985353 NA coding protein psRNATarget
HI403828.1
ncRNA:24   UGCCUGCUAGUUUCAACCCGCGCU   1
  |||*|=||||||||||*|||||||
targets:149   ACGAAUGAUCAAAGUUAGGCGCGA   172

2.5 Sequence 1953 from Patent EP2074227 NA coding protein psRNATarget
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