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BaseInfo

ncRNA ID	novel_osa_miR1573
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:21720415-21720630 [-]
Reference genome	IRGSP-1.0
Source	SRR1743000;SRR1743002;SRR1743006;SRR2098822;SRR2099436;SRR2099746;SRR2857736;SRR3123630;SRR3123645;SRR3123648;SRR1738225;SRR1738226;SRR1738227;SRR1738235;SRR1738237
Length	23
Mature sequence(if miRNA)	194 - AUAACUCAUCAAGAUCUAGAACU - 216
Stem-loop(if miRNA)	--               C  G            G  C                                   C UA            G CUCAUAUGG      AAA   AUAACUCAUCAAGAU UA AACUUUUAUUUU AU AUUUCUUCAUUUGACAAAGUGAUAGUAAUAUUGUU A  AAAUUUAUAUAU U         UUCUAU   A   ||||||||||||||| || |||||||||||| || ||||||||||||||||||||||||||||||||||| |  |||||||||||| |         ||||||   UAUUGAGUAGUUCUG AU UUGAAAAUAAAA UA UAAAGAAGUAGGCUGUUUCACUAUCAUUAUAACAA U  UUUAAAUGUAUA A         GAGAUA   U CA               U  G            A  U                                   A GC            G UAAUGGAUA      AUA
Stem-loop sequence	AUAACUCAUCAAGAUCUAGAACUUUUAUUUUGAUCAUUUCUUCAUUUGACAAAGUGAUAGUAAUAUUGUUCAUAAAAUUUAUAUAUGUCUCAUAUGGUUCUAUAAAAUAUAAUAGAGAUAGGUAAUAGAUAUGUAAAUUUCGUAAACAAUAUUACUAUCACUUUGUCGGAUGAAGAAAUUAUAAAAAUAAAAGUUGUAUGUCUUGAUGAGUUAUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK107543.1	ncRNA:23   UCAAGAUCUAGAACUACUCAAUA   1   ||||=|||||||||||||||||| targets:1173   AGUUUUAGAUCUUGAUGAGUUAU   1195 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-129-H11, full insert sequence	NA	coding protein	psRNATarget
AK107543.1	ncRNA:23   UCAAGAUCUAGAACUACUCAAUA   1   ||||*|||||*|||||||||||| targets:1327   AGUUAUAGAUGUUGAUGAGUUAU   1349 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-129-H11, full insert sequence	NA	coding protein	psRNATarget
XM_015764209.1	ncRNA:23   UCAAGAUCUAGAACUACUCAAUA   1   ||||*|||||||||||||||||| targets:52   AGUUAUAGAUCUUGAUGAGUUAU   74 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X7, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
XM_015764210.1	ncRNA:23   UCAAGAUCUAGAACUACUCAAUA   1   ||||*|||||||||||||||||| targets:52   AGUUAUAGAUCUUGAUGAGUUAU   74 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X12, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
XM_015764208.1	ncRNA:23   UCAAGAUCUAGAACUACUCAAUA   1   ||||*|||||||||||||||||| targets:52   AGUUAUAGAUCUUGAUGAGUUAU   74 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X2, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
XM_015764207.1	ncRNA:23   UCAAGAUCUAGAACUACUCAAUA   1   ||||*|||||||||||||||||| targets:52   AGUUAUAGAUCUUGAUGAGUUAU   74 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X1, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
AK068923.1	ncRNA:23   UCAAGAUCUAGAACUACUCAAUA   1   ||||*|||||||||||||||||| targets:1479   AGUUAUAGAUCUUGAUGAGUUAU   1501 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013170A09, full insert sequence	NA	coding protein	psRNATarget
AK121156.1	ncRNA:23   UCAAGAUCUAGAACUACUCAAUA   1   ||||*||*||||||||||||||| targets:122   AGUUAUAAAUCUUGAUGAGUUAU   144 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023079A20, full insert sequence	NA	coding protein	psRNATarget