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BaseInfo

ncRNA ID	novel_osa_miR1572
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:21846207-21846373 [-]
Reference genome	IRGSP-1.0
Source	SRR1743000;SRR1743002;SRR1743006;SRR2857731;SRR2857735;SRR5049790;SRR1654491
Length	23
Mature sequence(if miRNA)	145 - UUUUUGACCAACGUUUGACCAUU - 167
Stem-loop(if miRNA)	--     GAC             U UG       A    AAUUA    --AU   -----       U    UA   -CUUG     U   UUUUU   CAACGUUUGACCA U  UCUUAUU AAAA     UGUA    UAU     UAUUUAU UUAU  UGA     AUUUA C   |||||   ||||||||||||| |  ||||||| ||||     ||||    |||     ||||||| ||||  |||     |||||   AAAAA   GUUGCAAACUGGU A  AGAAUAA UUUU     ACAU    AUA     GUAAGUA AGUA  ACU     UAAAU A UG     AUA             U GU       A    -AAAA    GUUU   UCUUU       C    UG   UUUUG     U
Stem-loop sequence	UUUUUGACCAACGUUUGACCAUUUGUCUUAUUAAAAAAAUUAUGUAAUUAUUAUUUAUUUUAUUAUGACUUGAUUUAUCAUUAAAUGUUUUUCAGUAUGACAUGAAUGUUUCUAUAUUUGUACAAAAAUUUUAAAUAAGAUGAUUGGUCAAACGUUGAUAAAAAAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015792366.1	ncRNA:23   UUACCAGUUUGCAACCAGUUUUU   1   ||||||||||||||||||=|||| targets:843   AAUGGUCAAACGUUGGUCGAAAA   865 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9271886 (LOC9271886), mRNA	uncharacterized LOC9271886(LOC9271886)	coding protein	psRNATarget
AK287754.1	ncRNA:23   UUACCAGUUUGCAACCAGUUUUU   1   ||||||||||||||||||=|||| targets:851   AAUGGUCAAACGUUGGUCGAAAA   873 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065157N06, full insert sequence	NA	coding protein	psRNATarget
AK105698.1	ncRNA:23   UUACCAGUUUGCAACCAGUUUUU   1   ||||||||||||||||||=|||| targets:1257   AAUGGUCAAACGUUGGUCGAAAA   1279 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-201-D03, full insert sequence	NA	coding protein	psRNATarget
XM_015781390.1	ncRNA:23   UUACCAGUUUGCAACCAGUUUUU   1   =|||||||||||||||||||||| targets:1441   GAUGGUCAAACGUUGGUCAAAAA   1463 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X2, mRNA	uncharacterized LOC4336685(LOC4336685)	coding protein	psRNATarget
XM_015781389.1	ncRNA:23   UUACCAGUUUGCAACCAGUUUUU   1   =|||||||||||||||||||||| targets:1441   GAUGGUCAAACGUUGGUCAAAAA   1463 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X1, mRNA	uncharacterized LOC4336685(LOC4336685)	coding protein	psRNATarget
AK288883.1	ncRNA:23   UUACCAGUUUGCAACCAGUUUUU   1   ||||||=||||||||||=||||| targets:1070   AAUGGUUAAACGUUGGUUAAAAA   1092 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090079H22, full insert sequence	NA	coding protein	psRNATarget
AK103228.1	ncRNA:23   UUACCAGUUUGCAACCAGUUUUU   1   ||||||||||||||||||=|||= targets:2790   AAUGGUCAAACGUUGGUCGAAAG   2812 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033123C21, full insert sequence	NA	coding protein	psRNATarget
JB164475.1	ncRNA:23   UUACCAGUUUGCAACCAGUUUUU   1   |||*||||||||||||||||||| targets:175   AAUAGUCAAACGUUGGUCAAAAA   197 Target Full Sequence	0.0	Sequence 2139 from Patent EP2559767	NA	coding protein	psRNATarget
HI404014.1	ncRNA:23   UUACCAGUUUGCAACCAGUUUUU   1   |||*||||||||||||||||||| targets:175   AAUAGUCAAACGUUGGUCAAAAA   197 Target Full Sequence	0.0	Sequence 2139 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236144.1	ncRNA:23   UUACCAGUUUGCAACCAGUUUUU   1   |||*||||||||||||||||||| targets:175   AAUAGUCAAACGUUGGUCAAAAA   197 Target Full Sequence	0.0	Sequence 2139 from Patent EP2985353	NA	coding protein	psRNATarget
CT834259.1	ncRNA:23   UUACCAGUUUGCAACCAGUUUUU   1   ||||*||||||||||||=||||| targets:836   AAUGAUCAAACGUUGGUUAAAAA   858 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA044D20, full insert sequence	NA	coding protein	psRNATarget
XM_015788430.1	ncRNA:23   UUACCAGUUUGCAACCAGUUUUU   1   ||||*||||||||||||=||||| targets:1480   AAUGAUCAAACGUUGGUUAAAAA   1502 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group 12-oxophytodienoate reductase 1 (LOC4340490), transcript variant X3, mRNA	12-oxophytodienoate reductase 1(LOC4340490)	coding protein	psRNATarget
XM_015788428.1	ncRNA:23   UUACCAGUUUGCAACCAGUUUUU   1   ||||*||||||||||||=||||| targets:1622   AAUGAUCAAACGUUGGUUAAAAA   1644 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group 12-oxophytodienoate reductase 1 (LOC4340490), transcript variant X1, mRNA	12-oxophytodienoate reductase 1(LOC4340490)	coding protein	psRNATarget
AK288290.1	ncRNA:23   UUACCAGUUUGCAACCAGUUUUU   1   ||||||=|||||||||*|||||| targets:1753   AAUGGUUAAACGUUGGACAAAAA   1775 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090019D06, full insert sequence	NA	coding protein	psRNATarget
CT835080.1	ncRNA:23   UUACCAGUUUGCAACCAGUUUUU   1   ||*|||||||||||*|||||||| targets:1131   AAAGGUCAAACGUUUGUCAAAAA   1153 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN071I07, full insert sequence	NA	coding protein	psRNATarget