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BaseInfo

ncRNA ID	novel_osa_miR1566
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:264612-264736 [+]
Reference genome	IRGSP-1.0
Source	SRR1743000;SRR2857731;SRR5351737;SRR5351739
Length	24
Mature sequence(if miRNA)	1 - AUCUCCGUUUCAGGUUAUAAGACU - 24
Stem-loop(if miRNA)	--A           G                                    G      -A  A    UCUCCGUUUCA GUUAUAAGACUUUUUAGCAUUGUCUAUAUUUAUAUA AUGUUA  UG A    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||  ||    GGAGGCAAAGU UAAUAUUCUGAAAGAUCGUAAUAGGUGUAAAUAUAU UACAAU  AU U GAA           A                                    A      GG  C
Stem-loop sequence	AUCUCCGUUUCAGGUUAUAAGACUUUUUAGCAUUGUCUAUAUUUAUAUAGAUGUUAAUGAAUCUAGGUAACAUAUAUAUAAAUGUGGAUAAUGCUAGAAAGUCUUAUAAUAUGAAACGGAGGAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015764678.1	ncRNA:24   UCAGAAUAUUGGACUUUGCCUCUA   1   ||||||||||||||||||||||=| targets:1703   AGUCUUAUAACCUGAAACGGAGGU   1726 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group mannan endo-1,4-beta-mannosidase 8 (LOC9271116), mRNA	mannan endo-1,4-beta-mannosidase 8(LOC9271116)	coding protein	psRNATarget
AK120530.1	ncRNA:24   UCAGAAUAUUGGACUUUGCCUCUA   1   ||||||||||||||||||||||=| targets:1909   AGUCUUAUAACCUGAAACGGAGGU   1932 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013127H10, full insert sequence	NA	coding protein	psRNATarget
AK107726.1	ncRNA:24   UCAGAAUAUUGGACUUUGCCUCUA   1   ||||||||||||||||||||||=* targets:422   AGUCUUAUAACCUGAAACGGAGGG   445 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-132-F02, full insert sequence	NA	coding protein	psRNATarget
XM_015794062.1	ncRNA:24   UCAGAAUAUUGGACUUUGCCUCUA   1   ||||||||||||||||||||||=* targets:1020   AGUCUUAUAACCUGAAACGGAGGG   1043 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transcription factor AIG1 (LOC4345836), mRNA	transcription factor AIG1(LOC4345836)	coding protein	psRNATarget
AK288928.1	ncRNA:24   UCAGAAUAUUGGACUUUGCCUCUA   1   *|||||||||||||||||||||=| targets:1420   CGUCUUAUAACCUGAAACGGAGGU   1443 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090082F16, full insert sequence	NA	coding protein	psRNATarget
XM_015769902.1	ncRNA:24   UCAGAAUAUUGGACUUUGCCUCUA   1   |||=||||||=|||||||||||=| targets:1268   AGUUUUAUAAUCUGAAACGGAGGU   1291 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative methyltransferase DDB_G0268948 (LOC107278642), mRNA	putative methyltransferase DDB_G0268948(LOC107278642)	coding protein	psRNATarget
AK070816.1	ncRNA:24   UCAGAAUAUUGGACUUUGCCUCUA   1   ||||||||||*|||||||||||=| targets:1375   AGUCUUAUAAGCUGAAACGGAGGU   1398 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023066M01, full insert sequence	NA	coding protein	psRNATarget
CT837874.1	ncRNA:24   UCAGAAUAUUGGACUUUGCCUCUA   1   **||||||||||||||||||||=* targets:342   CAUCUUAUAACCUGAAACGGAGGG   365 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN062A18, full insert sequence	NA	coding protein	psRNATarget
AK288635.1	ncRNA:24   UCAGAAUAUUGGACUUUGCCUCUA   1   **||||||||||||||||||||=* targets:598   UAUCUUAUAACCUGAAACGGAGGA   621 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090055J05, full insert sequence	NA	coding protein	psRNATarget
AK071758.1	ncRNA:24   UCAGAAUAUUGGACUUUGCCUCUA   1   ***|||||||||||||||||||=| targets:1142   CCCCUUAUAACCUGAAACGGAGGU   1165 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023112J01, full insert sequence	NA	coding protein	psRNATarget
XM_015792379.1	ncRNA:24   UCAGAAUAUUGGACUUUGCCUCUA   1   ***|||||||||||||||||||=| targets:1154   CCCCUUAUAACCUGAAACGGAGGU   1177 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g14100 (LOC4342613), mRNA	uncharacterized protein At4g14100(LOC4342613)	coding protein	psRNATarget
AK100473.1	ncRNA:24   UCAGAAUAUUGGACUUUGCCUCUA   1   **||||||||||||||||||||=* targets:1360   CUUCUUAUAACCUGAAACGGAGGG   1383 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023093M20, full insert sequence	NA	coding protein	psRNATarget
AK288811.1	ncRNA:24   UCAGAAUAUUGGACUUUGCCUCUA   1   *||*||||||||||||||||||=* targets:2077   CGUAUUAUAACCUGAAACGGAGGG   2100 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090072B06, full insert sequence	NA	coding protein	psRNATarget
AK120483.1	ncRNA:24   UCAGAAUAUUGGACUUUGCCUCUA   1   |**|||||||=||||||||||||* targets:2528   AAACUUAUAAUCUGAAACGGAGAG   2551 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013112K02, full insert sequence	NA	coding protein	psRNATarget