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BaseInfo

ncRNA ID	novel_osa_miR1562
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:14338066-14338145 [+]
Reference genome	IRGSP-1.0
Source	SRR1743000;SRR5351739
Length	24
Mature sequence(if miRNA)	57 - UUGAAAUAACCGGGACUAAAGAUC - 80
Stem-loop(if miRNA)	--C              --   AA   G  ACUACCAAUCCG    CUUUAGUCCUGGUU  UUC  UCC GG            G    ||||||||||||||  |||  ||| ||            G    GAAAUCAGGGCCAA  AAG  UUC UA            A CUA              UA   --   -  UCGCUAGAAAUC
Stem-loop sequence	CCUUUAGUCCUGGUUUUCAAUCCGGGACUACCAAUCCGGGACUAAAGAUCGCUAUCUUGAAAUAACCGGGACUAAAGAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288463.1	ncRNA:24   CUAGAAAUCAGGGCCAAUAAAGUU   1   |||||||||||||||||||||||| targets:643   GAUCUUUAGUCCCGGUUAUUUCAA   666 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
AK288224.1	ncRNA:24   CUAGAAAUCAGGGCCAAUAAAGUU   1   *||||||||||||||||||||||| targets:1875   UAUCUUUAGUCCCGGUUAUUUCAA   1898 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090012B15, full insert sequence	NA	coding protein	psRNATarget
AK288438.1	ncRNA:24   CUAG----AAAUCAGGGCCAAUAAAGUU   1   ||||----|||||||||||||||||||| targets:2402   GAUCCUUUUUUAGUCCCGGUUAUUUCAA   2429 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
AK288191.1	ncRNA:24   CUAGAAAUCAGGGCCAAUAAAGUU   1   ||||||||**=||||||||||||| targets:2259   GAUCUUUACAUCCGGUUAUUUCAA   2282 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090007A11, full insert sequence	NA	coding protein	psRNATarget
AK288799.1	ncRNA:24   CUAGAAAUCAGGGCCAAUAAAGUU   1   |||*||||||=|=||||||||||| targets:292   GAUAUUUAGUUCUGGUUAUUUCAA   315 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090070K11, full insert sequence	NA	coding protein	psRNATarget